Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   JC624_RS01705 Genome accession   NZ_CP066124
Coordinates   357958..358434 (+) Length   158 a.a.
NCBI ID   WP_060464976.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352958..363434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS01695 - 353425..354207 (+) 783 WP_068563936.1 pilus assembly PilX family protein -
  JC624_RS01700 - 354222..357944 (+) 3723 WP_227062618.1 PilC/PilY family type IV pilus protein -
  JC624_RS01705 pilY2 357958..358434 (+) 477 WP_060464976.1 type IV pilin protein Machinery gene
  JC624_RS01710 - 358428..358892 (+) 465 WP_068563932.1 type IV pilin protein -
  JC624_RS01715 rpsP 359039..359290 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  JC624_RS01720 rimM 359310..359858 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  JC624_RS01725 trmD 359901..360656 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JC624_RS01730 rplS 360876..361244 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  JC624_RS01735 lip 361296..362237 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  JC624_RS01740 - 362353..363384 (-) 1032 WP_227062620.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17330.86 Da        Isoelectric Point: 9.5973

>NTDB_id=517568 JC624_RS01705 WP_060464976.1 357958..358434(+) (pilY2) [Acinetobacter pittii strain 32292]
MKSKFTYSFGFTLIELMVVVVIVAIFAAIALPSYQAYVLRADASRAEQKIQQIAMQLARQKSRNFNYRGFSTGATAPVIL
PVGAIGSAIKYQITVRDGDDTTKTLMDTSVLGQNWVIRAEASDPYNFTFLFNSSGLRCKNKAADNVTYTTCGTGGESW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=517568 JC624_RS01705 WP_060464976.1 357958..358434(+) (pilY2) [Acinetobacter pittii strain 32292]
ATGAAAAGTAAATTCACATATTCTTTCGGCTTTACTCTTATTGAGCTAATGGTTGTAGTAGTGATTGTTGCTATTTTTGC
TGCAATTGCATTGCCCTCATATCAAGCATATGTTCTGCGTGCTGATGCTTCGCGTGCAGAACAAAAAATTCAACAAATCG
CCATGCAACTCGCGCGTCAGAAATCTAGAAATTTTAATTATAGAGGTTTTTCTACTGGTGCTACCGCACCAGTAATTTTA
CCTGTTGGAGCGATTGGTAGCGCTATTAAATATCAAATAACGGTAAGAGATGGTGACGATACGACGAAAACTTTAATGGA
TACTTCGGTTTTAGGGCAAAATTGGGTTATTCGGGCAGAGGCTTCCGATCCTTATAATTTTACTTTTTTATTTAATAGTA
GCGGGTTACGTTGTAAGAATAAAGCTGCTGATAATGTTACTTATACAACTTGTGGTACGGGAGGGGAGTCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

48.408

99.367

0.481
  comE Acinetobacter baylyi ADP1

43.636

100

0.456