Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I9190_RS19025 Genome accession   NZ_CP066121
Coordinates   4100547..4101188 (+) Length   213 a.a.
NCBI ID   WP_151781207.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4095547..4106188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS19015 (I9190_19015) - 4097503..4098279 (-) 777 WP_151781206.1 NAD(P)H-binding protein -
  I9190_RS19020 (I9190_19020) recG 4098326..4100371 (+) 2046 WP_151778929.1 ATP-dependent DNA helicase RecG -
  I9190_RS19025 (I9190_19025) comF 4100547..4101188 (+) 642 WP_151781207.1 ComF family protein Machinery gene
  I9190_RS19030 (I9190_19030) - 4101234..4101629 (-) 396 WP_010590771.1 NUDIX hydrolase -
  I9190_RS19035 (I9190_19035) - 4101750..4102346 (-) 597 WP_009586053.1 TIGR00730 family Rossman fold protein -
  I9190_RS19040 (I9190_19040) - 4102505..4103518 (+) 1014 WP_004825220.1 magnesium and cobalt transport protein CorA -
  I9190_RS19045 (I9190_19045) - 4103638..4103925 (-) 288 WP_004825222.1 hypothetical protein -
  I9190_RS19050 (I9190_19050) - 4103960..4104583 (-) 624 WP_005034162.1 phospholipid-binding protein MlaC -
  I9190_RS19055 (I9190_19055) - 4104604..4105281 (-) 678 WP_004825227.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I9190_RS19060 (I9190_19060) mlaE 4105281..4106060 (-) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24875.98 Da        Isoelectric Point: 9.5711

>NTDB_id=517528 I9190_RS19025 WP_151781207.1 4100547..4101188(+) (comF) [Acinetobacter bereziniae strain GD0320]
MLQFIHQLLHKGVQYISPCLLCGIDQQQAHSLCQDCWNQLPWYKQSIERHEQQILCAHHYDFPIDRIIQTYKYEQQLQYQ
NVLAHSLLNLRFSRVQAIVPMPISTERLKERGYNQMLIVAKIMAKQLKIPVWQPVVRQAQHSQKGLSRVERLENIEHQFR
TIQSEKRKYKKVLIVDDVVTTGSSIHALTQALQRLGCQQISSLCIAAAHPSMK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=517528 I9190_RS19025 WP_151781207.1 4100547..4101188(+) (comF) [Acinetobacter bereziniae strain GD0320]
ATGCTCCAATTTATCCATCAACTGCTCCATAAAGGTGTTCAATATATTTCTCCATGCTTACTGTGCGGCATTGACCAACA
ACAAGCTCACTCCTTATGTCAGGACTGTTGGAATCAACTCCCTTGGTACAAACAATCCATAGAGCGACATGAACAACAAA
TACTTTGCGCACATCACTATGATTTCCCAATTGATCGCATCATTCAAACTTATAAATATGAGCAACAATTACAATATCAA
AACGTGCTTGCACATAGTTTATTGAACTTAAGATTTTCCAGAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGAGCG
CCTTAAAGAACGGGGTTACAACCAAATGTTGATTGTGGCTAAAATTATGGCAAAACAATTAAAAATTCCTGTTTGGCAAC
CCGTGGTTCGACAAGCTCAACATTCACAAAAAGGCTTAAGTCGAGTTGAACGACTGGAAAATATTGAGCATCAATTTCGA
ACCATTCAATCCGAAAAGAGAAAATATAAAAAAGTATTGATTGTGGATGATGTGGTCACAACGGGAAGTTCAATTCATGC
CCTCACCCAAGCTTTACAACGTTTGGGCTGTCAGCAGATTTCTAGTCTTTGTATTGCAGCAGCACATCCATCTATGAAAT
GA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.111

92.958

0.568
  comF Acinetobacter baumannii D1279779

60.606

92.958

0.563