Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I9192_RS10040 Genome accession   NZ_CP066119
Coordinates   2165619..2166002 (+) Length   127 a.a.
NCBI ID   WP_004830987.1    Uniprot ID   N9F1A6
Organism   Acinetobacter bereziniae strain GD03185     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2160619..2171002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9192_RS10010 (I9192_10010) kdsB 2161413..2162174 (+) 762 WP_005029263.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9192_RS10015 (I9192_10015) - 2162212..2163192 (+) 981 WP_005029261.1 DNA polymerase III, delta' subunit -
  I9192_RS10020 (I9192_10020) - 2163219..2163560 (+) 342 WP_004830992.1 PilZ domain-containing protein -
  I9192_RS10025 (I9192_10025) - 2163588..2164361 (+) 774 WP_005029259.1 TatD family hydrolase -
  I9192_RS10030 (I9192_10030) - 2164446..2165060 (+) 615 WP_005029256.1 TetR/AcrR family transcriptional regulator -
  I9192_RS10035 (I9192_10035) - 2165066..2165632 (+) 567 WP_005029254.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  I9192_RS10040 (I9192_10040) xcpV 2165619..2166002 (+) 384 WP_004830987.1 type II secretion system minor pseudopilin GspI Machinery gene
  I9192_RS10045 (I9192_10045) xcpW 2166005..2166658 (+) 654 WP_005029252.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I9192_RS10050 (I9192_10050) gspK 2166651..2167622 (+) 972 WP_004830985.1 type II secretion system minor pseudopilin GspK -
  I9192_RS10055 (I9192_10055) - 2167848..2168444 (+) 597 WP_005029250.1 6-carboxytetrahydropterin synthase -
  I9192_RS10060 (I9192_10060) ung 2168519..2169232 (+) 714 WP_004830983.1 uracil-DNA glycosylase -
  I9192_RS10065 (I9192_10065) - 2169229..2170350 (+) 1122 WP_004830982.1 enoyl-CoA hydratase/isomerase family protein -
  I9192_RS10070 (I9192_10070) tadA 2170357..2170881 (+) 525 WP_005029246.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14083.38 Da        Isoelectric Point: 9.7757

>NTDB_id=517485 I9192_RS10040 WP_004830987.1 2165619..2166002(+) (xcpV) [Acinetobacter bereziniae strain GD03185]
MKKNKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEISMMMINREWLTGTASKQITAQGETWQ
VDKKAESTLSPDVQKIDVQVSLFNTDTGKVEAGITNMVFYNYPIKEK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=517485 I9192_RS10040 WP_004830987.1 2165619..2166002(+) (xcpV) [Acinetobacter bereziniae strain GD03185]
ATGAAGAAAAATAAAGGCTTTACCCTTATCGAAGTGGTAGTGGCATTGGCGATCTTTGCTGTTGCAGCAATGGCTTTGAC
TAAAGTTGCGATGCAATATACCCAATCTACAGCCAATGCCATTCTACGGACCAAAGCACAATTTGTTGCACAAAATGAAA
TTTCAATGATGATGATTAACCGAGAGTGGTTAACTGGAACAGCTTCAAAACAGATCACGGCTCAAGGTGAAACATGGCAA
GTGGATAAAAAAGCAGAGTCTACACTGAGTCCTGATGTGCAAAAAATCGATGTGCAGGTCAGTTTATTTAATACTGATAC
AGGTAAAGTGGAAGCAGGAATCACCAATATGGTGTTTTATAATTATCCAATCAAAGAAAAATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F1A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76

98.425

0.748