Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   I6I02_RS08600 Genome accession   NZ_CP066093
Coordinates   1884923..1886242 (-) Length   439 a.a.
NCBI ID   WP_198463464.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879923..1891242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08590 (I6I02_08590) hpf 1883654..1884202 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6I02_RS08595 (I6I02_08595) - 1884280..1884942 (-) 663 WP_002890024.1 ComF family protein -
  I6I02_RS08600 (I6I02_08600) comFA/cflA 1884923..1886242 (-) 1320 WP_198463464.1 DEAD/DEAH box helicase Machinery gene
  I6I02_RS08605 (I6I02_08605) - 1886297..1886923 (+) 627 WP_002890020.1 YigZ family protein -
  I6I02_RS08610 (I6I02_08610) cysK 1887025..1887951 (+) 927 WP_002890018.1 cysteine synthase A -
  I6I02_RS08615 (I6I02_08615) - 1888099..1888758 (-) 660 WP_037600377.1 CBS and ACT domain-containing protein -
  I6I02_RS08620 (I6I02_08620) - 1888893..1889603 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  I6I02_RS08625 (I6I02_08625) - 1889603..1890367 (-) 765 WP_198463465.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50713.98 Da        Isoelectric Point: 9.7608

>NTDB_id=517377 I6I02_RS08600 WP_198463464.1 1884923..1886242(-) (comFA/cflA) [Streptococcus salivarius strain FDAARGOS_1045]
MVPKEYYGRLFTKEQLPVDYHPEALTLESMIKVDKQLRCKRCYSRIEEDWQLPGGQYYCRACIVFGRNQEGKELYYFPSK
TSEIEFPVLKWFGELTPYQAKVSEKLLRTYQKQKDSLVHAVTGAGKTEMIYNIVAYVLENKGHVAIASPRVDVCRELFLR
MKRDFTCSISLLHAESEPYDGSPLVIATTHQLLKFYQSFDLVIVDEVDAYPFVGNVMLNHAVVQAKTQTGRFIYLTATST
LSLEEQVRLGTLEKHHLARRFHGNPLVLPKFFWQGRLQKSLTRDKLPRPLLYQIKKQRKSKFPLLIFFPNIAIGEKFTSI
LQKYLPDEKMAFVSSKSEERSTIVEKFRKKELSILVTTTILERGVTFPQVDVFVCMANHHLYTSSSLIQIGGRVGRSPDR
PTGKLYFFHEGLSKSMLRCREEIKVMNKKGGFNNEVSAM

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=517377 I6I02_RS08600 WP_198463464.1 1884923..1886242(-) (comFA/cflA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGTACCTAAAGAATATTATGGACGACTATTTACGAAAGAGCAGTTGCCAGTGGACTATCACCCAGAGGCTTTAACATT
AGAAAGTATGATAAAGGTCGATAAACAACTTAGATGTAAAAGATGTTACAGTCGGATAGAGGAAGATTGGCAATTACCGG
GAGGTCAGTATTATTGTAGAGCTTGTATTGTCTTTGGTAGAAACCAAGAAGGAAAAGAACTTTATTATTTTCCTTCCAAA
ACATCAGAAATTGAATTTCCTGTTTTGAAGTGGTTTGGAGAATTGACTCCCTATCAAGCTAAGGTCTCAGAGAAACTTTT
GAGAACTTATCAAAAACAGAAAGATAGTCTCGTACATGCTGTGACCGGTGCTGGTAAGACAGAAATGATTTATAACATCG
TTGCCTATGTTCTTGAAAATAAAGGTCATGTAGCTATCGCAAGTCCTAGGGTTGATGTTTGTCGAGAATTATTTCTACGT
ATGAAGAGGGATTTTACTTGTAGTATTTCCCTGCTTCATGCTGAGAGTGAACCATATGATGGTAGTCCGCTTGTAATAGC
TACCACACATCAACTACTAAAGTTTTACCAGAGTTTTGACTTAGTTATTGTAGATGAAGTAGACGCATATCCTTTTGTAG
GAAATGTCATGTTAAATCATGCTGTAGTGCAAGCGAAGACCCAAACCGGTCGATTTATTTACTTAACAGCGACTTCAACA
TTATCTTTAGAAGAGCAAGTTCGACTTGGGACTTTAGAAAAGCATCACCTTGCTAGACGTTTCCATGGAAATCCTTTAGT
ACTTCCTAAATTCTTCTGGCAGGGCAGATTACAAAAATCTCTGACAAGAGACAAGCTTCCAAGACCTCTTCTTTATCAGA
TTAAAAAGCAACGTAAATCAAAATTTCCTCTATTAATCTTCTTTCCAAATATAGCGATAGGTGAAAAGTTTACAAGTATT
CTACAAAAATATCTTCCAGATGAAAAAATGGCCTTTGTTTCCTCAAAAAGCGAGGAGCGTTCAACTATCGTAGAGAAGTT
CCGAAAAAAAGAACTGTCTATCTTAGTTACAACAACTATCCTCGAACGTGGTGTAACCTTTCCACAAGTAGATGTTTTTG
TTTGTATGGCAAATCATCACTTATATACTAGTTCGAGTCTTATTCAGATTGGAGGTCGAGTTGGAAGATCACCAGATAGA
CCGACAGGAAAGCTTTATTTCTTTCATGAAGGACTATCCAAATCAATGCTTCGGTGTCGAGAAGAGATAAAGGTTATGAA
TAAAAAAGGAGGGTTTAACAATGAAGTGTCTGCTATGTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(290-396)

Type III restriction enzyme, res subunit (ResIII)

(94-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

55.684

98.178

0.547
  comFA/cflA Streptococcus pneumoniae Rx1

55.684

98.178

0.547
  comFA/cflA Streptococcus pneumoniae D39

55.684

98.178

0.547
  comFA/cflA Streptococcus pneumoniae R6

55.684

98.178

0.547
  comFA/cflA Streptococcus mitis NCTC 12261

54.839

98.861

0.542
  comFA/cflA Streptococcus mitis SK321

54.292

98.178

0.533
  comFA Lactococcus lactis subsp. cremoris KW2

45.952

95.672

0.44
  comFA Latilactobacillus sakei subsp. sakei 23K

36.782

99.089

0.364