Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6H74_RS10675 Genome accession   NZ_CP066069
Coordinates   2147096..2148019 (-) Length   307 a.a.
NCBI ID   WP_003057816.1    Uniprot ID   A0A9X8T611
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2142096..2153019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS10675 (I6H74_10670) amiF 2147096..2148019 (-) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  I6H74_RS10680 (I6H74_10675) amiE 2148012..2149082 (-) 1071 WP_003060269.1 ABC transporter ATP-binding protein Regulator
  I6H74_RS10685 (I6H74_10680) amiD 2149091..2150017 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6H74_RS10690 (I6H74_10685) amiC 2150017..2151519 (-) 1503 WP_003057826.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.93 Da        Isoelectric Point: 6.4058

>NTDB_id=517126 I6H74_RS10675 WP_003057816.1 2147096..2148019(-) (amiF) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=517126 I6H74_RS10675 WP_003057816.1 2147096..2148019(-) (amiF) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGATCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGACTTACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAACCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814