Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I28_RS02610 Genome accession   NZ_CP066062
Coordinates   520035..520457 (-) Length   140 a.a.
NCBI ID   WP_049405716.1    Uniprot ID   A0A9Q4GZ05
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 515035..525457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS02600 (I6I28_02600) - 516459..518297 (-) 1839 WP_103370503.1 acyltransferase family protein -
  I6I28_RS02605 (I6I28_02605) - 518937..519635 (-) 699 WP_103370086.1 transglycosylase family protein -
  I6I28_RS02610 (I6I28_02610) ssb 520035..520457 (-) 423 WP_049405716.1 single-stranded DNA-binding protein Machinery gene
  I6I28_RS02615 (I6I28_02615) - 520650..521090 (+) 441 WP_049405715.1 YwpF-like family protein -
  I6I28_RS02620 (I6I28_02620) fabZ 521191..521631 (-) 441 WP_002471640.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6I28_RS02625 (I6I28_02625) murA 521680..522945 (-) 1266 WP_049405714.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6I28_RS02630 (I6I28_02630) - 523273..523506 (-) 234 WP_040806344.1 DUF1146 family protein -
  I6I28_RS02635 (I6I28_02635) - 523693..524127 (-) 435 WP_049405712.1 carboxymuconolactone decarboxylase family protein -
  I6I28_RS02640 (I6I28_02640) - 524312..524671 (+) 360 WP_049405711.1 DUF488 domain-containing protein -
  I6I28_RS02645 (I6I28_02645) - 524749..525153 (-) 405 WP_040806347.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16070.14 Da        Isoelectric Point: 6.7560

>NTDB_id=517015 I6I28_RS02610 WP_049405716.1 520035..520457(-) (ssb) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MLNNITVVGRLTKHPQIYDKEGRKRATFTVAVERNYRDKNNQPIVDFLFCKAFGKLAENIEHYLKQGSLVGITGQLHSSK
YDKEGQTHFISEINIEYIKFMSSPKSDHTVQTHTSTIESYNPFDNPDPLTINPDEIIEIV

Nucleotide


Download         Length: 423 bp        

>NTDB_id=517015 I6I28_RS02610 WP_049405716.1 520035..520457(-) (ssb) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
ATGCTAAACAATATTACAGTAGTAGGGCGACTTACTAAACACCCTCAAATTTATGATAAGGAAGGGAGGAAGAGAGCGAC
TTTCACTGTTGCAGTGGAGCGCAATTATCGTGATAAGAACAATCAACCCATCGTTGACTTTTTATTCTGTAAAGCCTTTG
GGAAACTAGCTGAGAATATTGAACACTACCTCAAGCAAGGTTCTCTCGTAGGCATAACCGGTCAATTACACTCAAGCAAA
TACGATAAAGAAGGCCAGACACATTTCATTTCCGAGATCAATATCGAATATATTAAATTTATGTCATCACCCAAATCAGA
TCATACAGTCCAAACTCACACTTCAACTATAGAATCATATAATCCATTTGATAATCCAGATCCCTTAACTATCAATCCAG
ACGAAATTATTGAAATTGTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

58.647

95

0.557
  ssb Staphylococcus aureus MW2

57.895

95

0.55