Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6H78_RS08270 Genome accession   NZ_CP066059
Coordinates   1685322..1686554 (+) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680322..1691554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS08240 (I6H78_08240) galE 1680991..1682010 (+) 1020 WP_198459372.1 UDP-glucose 4-epimerase GalE -
  I6H78_RS08245 (I6H78_08245) - 1682012..1682978 (+) 967 Protein_1591 glycosyltransferase family 2 protein -
  I6H78_RS08250 (I6H78_08250) - 1683053..1683256 (-) 204 WP_002874767.1 ferredoxin -
  I6H78_RS08255 (I6H78_08255) - 1683302..1683811 (+) 510 WP_000410193.1 SAG1386/EF1546 family surface-associated protein -
  I6H78_RS08260 (I6H78_08260) cmk 1683821..1684495 (+) 675 WP_000849406.1 (d)CMP kinase -
  I6H78_RS08265 (I6H78_08265) - 1684614..1685120 (+) 507 WP_000162308.1 dihydrofolate reductase -
  I6H78_RS08270 (I6H78_08270) clpX 1685322..1686554 (+) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6H78_RS08275 (I6H78_08275) yihA 1686563..1687150 (+) 588 WP_198459374.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6H78_RS08280 (I6H78_08280) - 1687160..1687540 (+) 381 WP_001140420.1 RidA family protein -
  I6H78_RS08285 (I6H78_08285) rapZ 1687592..1688482 (+) 891 WP_000163046.1 RNase adapter RapZ -
  I6H78_RS08290 (I6H78_08290) - 1688479..1689456 (+) 978 WP_001231060.1 YvcK family protein -
  I6H78_RS08295 (I6H78_08295) whiA 1689453..1690364 (+) 912 WP_042902710.1 DNA-binding protein WhiA -
  I6H78_RS08300 (I6H78_08300) - 1690396..1691364 (-) 969 WP_198459375.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=516993 I6H78_RS08270 WP_002874765.1 1685322..1686554(+) (clpX) [Streptococcus oralis strain FDAARGOS_1021]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=516993 I6H78_RS08270 WP_002874765.1 1685322..1686554(+) (clpX) [Streptococcus oralis strain FDAARGOS_1021]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAGAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TTTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCCTAAATCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAATATCCTGATGATTGGTCCAACTGGTTCTGGGAAAACTTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCAGATGCGACAGCTCTTACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAGCGTGGAATTATTTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCGGGTGAAGGAGTGCAACAAGCCCTTCTTAAAA
TCATCGAAGGAACTGTAGCCAGCGTACCACCTCAGGGTGGACGCAAACATCCGCAACAAGAGATGATTCAGGTGGACACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGTGAGAAAGTTAT
TGGATTTGGTCAAAACAACAAGGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGGATTATCCCTGAGTTGATTGGACGCTTGCCTGTATTTGCTGCTCTTGAGCAATTGACAGTTGATGACTTGGTTCGC
ATCCTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAGGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGGTCTATTATCGAAG
AAACCATGCTAGACGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563