Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6H72_RS01455 Genome accession   NZ_CP066055
Coordinates   283782..285014 (+) Length   410 a.a.
NCBI ID   WP_198458139.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 281918..294120 283782..285014 within 0


Gene organization within MGE regions


Location: 281918..294120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS01440 (I6H72_01440) - 281918..282757 (+) 840 WP_006267886.1 thymidylate synthase -
  I6H72_RS01445 (I6H72_01445) - 283042..283554 (+) 513 WP_006267777.1 dihydrofolate reductase -
  I6H72_RS01450 (I6H72_01450) - 283554..283727 (+) 174 WP_003024903.1 hypothetical protein -
  I6H72_RS01455 (I6H72_01455) clpX 283782..285014 (+) 1233 WP_198458139.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6H72_RS01460 (I6H72_01460) yihA 285026..285613 (+) 588 WP_198458140.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6H72_RS01465 (I6H72_01465) - 285938..286645 (+) 708 WP_198458141.1 glucosaminidase domain-containing protein -
  I6H72_RS01470 (I6H72_01470) - 286820..287617 (+) 798 WP_020997828.1 formate/nitrite transporter family protein -
  I6H72_RS01475 (I6H72_01475) - 287831..289567 (+) 1737 WP_198458142.1 ABC transporter ATP-binding protein -
  I6H72_RS01480 (I6H72_01480) - 289557..291305 (+) 1749 WP_198458143.1 ABC transporter ATP-binding protein -
  I6H72_RS01485 (I6H72_01485) - 291424..292959 (-) 1536 WP_198458144.1 ATP-binding cassette domain-containing protein -
  I6H72_RS01490 (I6H72_01490) - 293380..294120 (-) 741 WP_198458145.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45639.15 Da        Isoelectric Point: 4.3968

>NTDB_id=516830 I6H72_RS01455 WP_198458139.1 283782..285014(+) (clpX) [Streptococcus constellatus strain FDAARGOS_1015]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIECAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKSILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=516830 I6H72_RS01455 WP_198458139.1 283782..285014(+) (clpX) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCCTACAAATCGTACGAATGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGCCAAGAAGAAGTCCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGCGTGGAATTAGCGCAAGAAATCATCAGAGAGGAACTAGCAGAAGAAG
TACTAGCAGACTTGTCAGAAGTGCCAAAACCACAAGAACTACTCAATATTTTGAATCATTATGTGATTGGGCAAGACCGT
GCTAAGCGTGCTTTGGCTGTGGCTGTTTACAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGAAGAGGAAGA
TGTTGAATTGCAGAAATCCAATATTCTCATGATTGGGCCAACTGGTTCTGGCAAGACCTTCCTCGCTCAAACCTTAGCGA
AAAGTCTAAATGTTCCTTTTGCGATTGCAGACGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGTGTGCTGAACGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGCGATGTGTCTGGTGAAGGCGTTCAGCAAGCGCTTCTAAAAA
TCATTGAAGGAACTGTTGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCACCCTCAACAAGAAATGATTCAAGTAGATACG
AAAAATATCCTCTTTATCGTTGGAGGAGCTTTCGACGGTATCGAAGAAATTGTTAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAATAATAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACAGTTGATGATTTGGTGCGA
ATCCTGCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTCCTTTCTTATGACGATGTTAAACTAGAGTTTGA
TGATGATGCTCTTCAGGAAATTGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGCTTACGTTCAATCATCGAGG
AAACTATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGCTGGTACGGATTACCAAGGAAGCAGTTGAC
GGAACGGATAAGTCGATTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.098

100

0.861
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.049

0.566