Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZO16_RS05620 Genome accession   NZ_CP080075
Coordinates   1158933..1159670 (-) Length   245 a.a.
NCBI ID   WP_124053701.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ663Rt     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1153933..1164670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO16_RS05590 (KZO16_05605) yfiL 1154090..1154455 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KZO16_RS05595 (KZO16_05610) aroF 1154666..1155736 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZO16_RS05600 (KZO16_05615) tyrA 1155747..1156868 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZO16_RS05605 (KZO16_05620) pheA 1156911..1158071 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZO16_RS05610 (KZO16_05625) pheL 1158170..1158217 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZO16_RS05615 (KZO16_05630) raiA 1158321..1158662 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KZO16_RS05620 (KZO16_05635) comL 1158933..1159670 (-) 738 WP_124053701.1 outer membrane protein assembly factor BamD Machinery gene
  KZO16_RS05625 (KZO16_05640) rluD 1159805..1160785 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZO16_RS05630 (KZO16_05645) yfiH 1160782..1161513 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KZO16_RS05635 (KZO16_05650) clpC 1161643..1164216 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27814.38 Da        Isoelectric Point: 5.8432

>NTDB_id=516771 KZO16_RS05620 WP_124053701.1 1158933..1159670(-) (comL) [Escherichia coli strain 19SZHZ663Rt]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAIIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=516771 KZO16_RS05620 WP_124053701.1 1158933..1159670(-) (comL) [Escherichia coli strain 19SZHZ663Rt]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGATAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

38.75

97.959

0.38
  comL Neisseria meningitidis MC58

40.351

93.061

0.376