Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KZO15_RS09110 Genome accession   NZ_CP080070
Coordinates   1911293..1913125 (+) Length   610 a.a.
NCBI ID   WP_157700740.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ713Rt     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906293..1918125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO15_RS09075 (KZO15_09045) dcyD 1906519..1907505 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  KZO15_RS09080 (KZO15_09050) tcyL 1907520..1908188 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KZO15_RS09085 (KZO15_09055) tcyN 1908185..1908937 (+) 753 WP_121835284.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KZO15_RS09090 (KZO15_09060) sdiA 1909167..1909889 (+) 723 WP_001619544.1 transcriptional regulator SdiA -
  KZO15_RS09095 (KZO15_09065) yecF 1909957..1910181 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KZO15_RS09100 (KZO15_09070) yecU 1910168..1910344 (-) 177 WP_001307856.1 protein YecU -
  KZO15_RS09105 (KZO15_09075) letA 1910640..1911296 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KZO15_RS09110 (KZO15_09080) uvrC 1911293..1913125 (+) 1833 WP_157700740.1 excinuclease ABC subunit UvrC Machinery gene
  KZO15_RS09115 (KZO15_09085) pgsA 1913182..1913730 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KZO15_RS09135 (KZO15_09105) yecA 1914379..1915044 (+) 666 WP_001619541.1 UPF0149 family protein YecA -
  KZO15_RS09140 (KZO15_09110) tyrP 1915106..1916317 (-) 1212 WP_000797573.1 tyrosine transporter TyrP -
  KZO15_RS09145 (KZO15_09115) yecH 1916508..1916747 (+) 240 WP_001619539.1 YecH family metal-binding protein -
  KZO15_RS09150 (KZO15_09120) ftnA 1916785..1917282 (-) 498 WP_096989017.1 non-heme ferritin -
  KZO15_RS09155 (KZO15_09125) yecR 1917453..1917776 (-) 324 WP_001237869.1 YecR-like lipofamily protein -
  KZO15_RS09160 (KZO15_09130) azuC 1918039..1918125 (+) 87 WP_010723106.1 stress response protein AzuC -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68230.11 Da        Isoelectric Point: 9.3685

>NTDB_id=516706 KZO15_RS09110 WP_157700740.1 1911293..1913125(+) (uvrC) [Escherichia coli strain 19SZHZ713Rt]
MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLL
EHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT
EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLD
FNLSDKTLLVDSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTLHQRLTALASVLKLPEVKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA
ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET
IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=516706 KZO15_RS09110 WP_157700740.1 1911293..1913125(+) (uvrC) [Escherichia coli strain 19SZHZ713Rt]
GTGAGTGATCAGTTTGACGCAAAAGCGTTTTTAAAAACCGTAACCAGCCAGCCAGGCGTTTATCGCATGTACGATGCTGG
TGGTACGGTTATCTATGTCGGCAAAGCGAAAGACCTGAAAAAACGGCTTTCCAGCTATTTCCGTAGCAACCTCGCTTCGC
GCAAAACCGAAGCGCTGGTCGCCCAGATCCAGCAAATTGATGTAACGGTTACTCATACAGAAACCGAAGCGCTGTTACTG
GAACACAACTACATCAAACTTTATCAGCCGCGTTACAACGTTTTGCTACGCGATGATAAATCATATCCTTTTATCTTCCT
GAGTGGCGATACCCACCCGCGTCTGGCGATGCATCGTGGTGCGAAGCATGCCAAAGGTGAATATTTCGGCCCGTTCCCGA
ATGGCTATGCCGTACGTGAAACTCTGGCGCTACTGCAAAAGATTTTCCCCATTCGCCAGTGCGAAAATAGTGTTTATCGC
AATCGCTCGCGTCCGTGTCTGCAATATCAGATAGGGCGCTGTCTGGGACCGTGTGTTGAAGGACTGGTGAGTGAAGAAGA
ATACGCTCAGCAGGTCGAGTATGTGCGCCTGTTTTTGTCTGGCAAAGATGATCAGGTGCTTACGCAACTCATTAGCCGTA
TGGAAACTGCCAGTCAGAATCTGGAGTTTGAAGAAGCGGCACGTATTCGCGACCAAATTCAGGCGGTGCGACGCGTCACC
GAAAAACAGTTTGTTTCCAATACCGGCGACGACCTTGACGTTATTGGTGTGGCGTTCGATGCGGGCATGGCTTGTGTCCA
CGTATTGTTCATTCGTCAGGGCAAAGTGCTCGGCAGCCGCAGCTATTTCCCGAAAGTGCCTGGCGGTACGGAACTGAGCG
AGGTGGTAGAAACCTTCGTAGGTCAGTTCTATTTACAAGGCAGCCAGATGCGCACCTTACCGGGTGAGATCCTGCTCGAT
TTTAATCTTAGCGATAAAACGCTGCTCGTCGATTCCCTTTCAGAACTGGCGGGACGCAAGATTAATGTTCAAACCAAACC
TCGCGGCGATAGGGCGCGTTATCTGAAACTCGCGCGCACCAATGCGGCGACGGCCTTAACCAGCAAACTTTCGCAGCAAT
CTACCCTTCACCAGCGACTGACCGCGCTTGCCAGCGTGTTGAAATTGCCGGAAGTGAAGCGGATGGAGTGCTTTGACATC
AGCCATACCATGGGCGAACAAACCGTCGCTTCCTGTGTGGTGTTTGATGCTAACGGCCCGCTGCGTGCGGAGTATCGGCG
CTATAACATTACAGGCATCACGCCGGGCGATGATTATGCGGCGATGAATCAGGTGCTGCGTCGGCGTTATGGTAAAGCCA
TTGACGACAGTAAGATCCCGGATGTGATCCTTATCGACGGCGGCAAAGGCCAGCTTGCGCAGGCGAAAAATGTCTTCGCC
GAACTGGATGTCTCATGGGATAAAAATCATCCGCTGCTACTTGGCGTTGCCAAAGGAGCAGATCGTAAGGCTGGACTGGA
AACGCTGTTCTTTGAGCCGGAAGGTGAGGGATTTAGTTTGCCGCCAGATTCACCCGCGCTGCATGTTATCCAGCATATTC
GCGATGAATCACATGATCACGCGATTGGCGGGCACCGTAAAAAACGGGCGAAGGTCAAAAATACCAGTTCCCTGGAAACC
ATTGAAGGCGTCGGGCCAAAACGTCGGCAAATGTTGTTGAAATATATGGGCGGTTTGCAAGGTTTACGTAACGCCAGCGT
CGAGGAAATTGCAAAAGTGCCGGGTATTTCGCAAGGTCTGGCAGAAAAGATCTTCTGGTCGTTGAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.931

99.836

0.379
  uvrC Streptococcus pneumoniae R6

37.603

99.836

0.375
  uvrC Streptococcus pneumoniae D39

37.603

99.836

0.375