Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6I31_RS09770 Genome accession   NZ_CP066042
Coordinates   2019806..2020246 (-) Length   146 a.a.
NCBI ID   WP_115313276.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain FDAARGOS_1074     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2014806..2025246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I31_RS09755 (I6I31_09755) gcvPA 2015793..2017139 (-) 1347 WP_115313280.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I6I31_RS09760 (I6I31_09760) gcvT 2017158..2018249 (-) 1092 WP_115313279.1 glycine cleavage system aminomethyltransferase GcvT -
  I6I31_RS09765 (I6I31_09765) - 2018436..2018948 (-) 513 WP_115313278.1 shikimate kinase -
  I6I31_RS09770 (I6I31_09770) comGD 2019806..2020246 (-) 441 WP_115313276.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6I31_RS09775 (I6I31_09775) comGC 2020263..2020490 (-) 228 Protein_1954 competence type IV pilus major pilin ComGC -
  I6I31_RS09780 (I6I31_09780) comGB 2020556..2021620 (-) 1065 WP_115313275.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6I31_RS09785 (I6I31_09785) comGA 2021592..2022566 (-) 975 Protein_1956 competence type IV pilus ATPase ComGA -
  I6I31_RS09790 (I6I31_09790) - 2022623..2023246 (-) 624 WP_115313274.1 MBL fold metallo-hydrolase -
  I6I31_RS09795 (I6I31_09795) - 2023246..2023572 (-) 327 WP_115313273.1 MTH1187 family thiamine-binding protein -
  I6I31_RS09800 (I6I31_09800) - 2023572..2024558 (-) 987 WP_115313272.1 glucokinase -
  I6I31_RS09805 (I6I31_09805) - 2024555..2024758 (-) 204 WP_115313271.1 YqgQ family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17017.24 Da        Isoelectric Point: 10.5537

>NTDB_id=516703 I6I31_RS09770 WP_115313276.1 2019806..2020246(-) (comGD) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
MMKQLQISKAKAFTLIEMLSILLIISCLILTTLWSRSLLNIKTLNEEYKIEQLITKFNYFKSKAISNESSITLLFFNNTG
RVQVVEEKGNKYRFNIKGGKVINIAKLNTINFDKYGNISNFGSLMKEHIYKIIFHIEKGRIRYVKI

Nucleotide


Download         Length: 441 bp        

>NTDB_id=516703 I6I31_RS09770 WP_115313276.1 2019806..2020246(-) (comGD) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
ATGATGAAGCAATTGCAAATTAGCAAAGCTAAAGCATTTACCTTAATAGAGATGTTATCAATATTGTTGATTATTAGTTG
CCTAATATTAACTACCCTTTGGTCACGAAGTTTACTAAACATAAAAACTTTAAACGAAGAGTATAAAATTGAACAATTAA
TCACAAAATTCAATTATTTCAAATCAAAAGCTATTAGTAATGAAAGTTCAATTACTTTATTATTTTTCAATAATACAGGA
AGAGTACAAGTAGTAGAAGAAAAAGGTAATAAATATAGATTCAATATCAAAGGTGGTAAAGTGATTAATATTGCTAAACT
TAATACTATTAATTTCGATAAATATGGAAATATTAGCAATTTTGGCTCTCTAATGAAAGAACATATTTATAAAATAATTT
TCCATATTGAAAAAGGGCGAATAAGATATGTCAAAATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.667

100

0.5
  comGD Staphylococcus aureus N315

48.667

100

0.5