Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   I6I31_RS09780 Genome accession   NZ_CP066042
Coordinates   2020556..2021620 (-) Length   354 a.a.
NCBI ID   WP_115313275.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain FDAARGOS_1074     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2015556..2026620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I31_RS09755 (I6I31_09755) gcvPA 2015793..2017139 (-) 1347 WP_115313280.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I6I31_RS09760 (I6I31_09760) gcvT 2017158..2018249 (-) 1092 WP_115313279.1 glycine cleavage system aminomethyltransferase GcvT -
  I6I31_RS09765 (I6I31_09765) - 2018436..2018948 (-) 513 WP_115313278.1 shikimate kinase -
  I6I31_RS09770 (I6I31_09770) comGD 2019806..2020246 (-) 441 WP_115313276.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6I31_RS09775 (I6I31_09775) comGC 2020263..2020490 (-) 228 Protein_1954 competence type IV pilus major pilin ComGC -
  I6I31_RS09780 (I6I31_09780) comGB 2020556..2021620 (-) 1065 WP_115313275.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6I31_RS09785 (I6I31_09785) comGA 2021592..2022566 (-) 975 Protein_1956 competence type IV pilus ATPase ComGA -
  I6I31_RS09790 (I6I31_09790) - 2022623..2023246 (-) 624 WP_115313274.1 MBL fold metallo-hydrolase -
  I6I31_RS09795 (I6I31_09795) - 2023246..2023572 (-) 327 WP_115313273.1 MTH1187 family thiamine-binding protein -
  I6I31_RS09800 (I6I31_09800) - 2023572..2024558 (-) 987 WP_115313272.1 glucokinase -
  I6I31_RS09805 (I6I31_09805) - 2024555..2024758 (-) 204 WP_115313271.1 YqgQ family protein -
  I6I31_RS09810 (I6I31_09810) - 2024739..2026202 (-) 1464 WP_115313270.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 41814.09 Da        Isoelectric Point: 10.1162

>NTDB_id=516704 I6I31_RS09780 WP_115313275.1 2020556..2021620(-) (comGB) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
MKKLSISIFKYKKRNLSVIQSTELLQRLYQLLNHGFTLFESFRFLNHHFDYKDKTLSHSIIHSIQTGSTCYDILKLIGYP
DIILIQIKFAKNYGSLEKALIDSIHYMERNIKAKKQLIKTLQYSIVLISIFMIILIVLNMTVIPQFQQLYSTMNVELSIF
QNILTTLITQLPKTLGIISLILIIGIFILLRYFRKLSIKKQIYYILKVPILQSYDKILRTYQFSNELSLFYKNSISLQQI
VNIYKSEQNNAFFKFLGNYLHDETNKGIPLPIILKQLQCFQYDMVKFMQQGEKSGKLDIELKLYSQMLLQQFEDKVIKHT
KFIQPIIFFILGLFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=516704 I6I31_RS09780 WP_115313275.1 2020556..2021620(-) (comGB) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
GTGAAGAAGTTGTCAATAAGTATATTTAAATATAAAAAAAGAAATCTATCAGTAATTCAATCTACTGAATTACTTCAAAG
ACTATACCAATTGTTAAATCATGGCTTTACATTATTTGAAAGCTTTAGGTTCTTAAATCACCATTTTGACTATAAAGACA
AAACTTTAAGTCACTCAATCATTCATTCCATACAAACTGGTTCAACGTGTTATGATATTTTAAAACTGATTGGTTATCCT
GACATTATACTAATTCAAATTAAATTTGCAAAGAATTATGGAAGTTTAGAGAAAGCATTAATAGATTCAATCCATTATAT
GGAAAGGAACATAAAAGCAAAAAAGCAACTCATTAAAACCTTACAGTATTCAATAGTACTAATAAGTATATTTATGATCA
TTCTCATTGTCTTAAATATGACTGTTATACCTCAATTTCAACAGCTATACTCAACTATGAATGTAGAATTATCTATATTC
CAAAATATTTTAACTACTCTAATTACTCAACTCCCTAAAACCCTTGGAATAATTTCACTTATTCTCATTATAGGCATTTT
CATTTTATTAAGATATTTTAGAAAACTATCAATTAAAAAACAGATATACTATATTCTTAAAGTCCCAATTCTTCAATCTT
ATGACAAAATTTTAAGAACATATCAATTTTCTAACGAACTCTCTCTTTTCTATAAAAATAGTATTAGTCTTCAGCAAATC
GTAAATATTTATAAAAGTGAACAAAATAATGCCTTCTTTAAATTTTTAGGTAATTATCTTCACGATGAAACAAACAAAGG
TATCCCTCTACCTATCATATTAAAACAATTACAATGCTTCCAATACGACATGGTTAAATTTATGCAACAAGGTGAAAAAA
GTGGAAAACTAGATATTGAATTGAAATTATACAGCCAAATGTTATTACAACAATTTGAAGATAAAGTTATAAAACATACT
AAGTTTATTCAACCTATTATATTTTTCATATTAGGGTTATTTATCGTTTCATTATATTTAGTAATAATGCTTCCTATGTT
CGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(223-345)

Type II secretion system (T2SS), protein F (T2SSF)

(25-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

47.899

100

0.483
  comGB Staphylococcus aureus N315

47.899

100

0.483