Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I31_RS00520 Genome accession   NZ_CP066042
Coordinates   96933..97328 (-) Length   131 a.a.
NCBI ID   WP_115312941.1    Uniprot ID   A0A380H0S0
Organism   Staphylococcus saccharolyticus strain FDAARGOS_1074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 91933..102328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I31_RS00495 (I6I31_00495) thiE 92628..93269 (-) 642 WP_115312945.1 thiamine phosphate synthase -
  I6I31_RS00500 (I6I31_00500) thiM 93273..94061 (-) 789 WP_115314118.1 hydroxyethylthiazole kinase -
  I6I31_RS00505 (I6I31_00505) thiD 94054..94875 (-) 822 WP_115312944.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6I31_RS00510 (I6I31_00510) tenA 94868..95557 (-) 690 WP_115312943.1 thiaminase II -
  I6I31_RS00515 (I6I31_00515) - 95865..96548 (-) 684 WP_115312942.1 transglycosylase family protein -
  I6I31_RS00520 (I6I31_00520) ssb 96933..97328 (-) 396 WP_115312941.1 single-stranded DNA-binding protein Machinery gene
  I6I31_RS00525 (I6I31_00525) - 97518..97958 (+) 441 WP_115312940.1 YwpF-like family protein -
  I6I31_RS00530 (I6I31_00530) fabZ 98209..98646 (-) 438 WP_115312939.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6I31_RS00535 (I6I31_00535) murA 98689..99954 (-) 1266 WP_115312938.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6I31_RS00540 (I6I31_00540) - 100064..100297 (-) 234 WP_115312937.1 DUF1146 family protein -
  I6I31_RS00545 (I6I31_00545) - 100445..100849 (-) 405 WP_115312936.1 F0F1 ATP synthase subunit epsilon -
  I6I31_RS00550 (I6I31_00550) atpD 100869..102281 (-) 1413 WP_115312935.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15109.11 Da        Isoelectric Point: 5.2896

>NTDB_id=516688 I6I31_RS00520 WP_115312941.1 96933..97328(-) (ssb) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
MLNKIVIVGRLTKDAQIYEKEESKVATFCVATERNYKDENNEISSDYLICKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKMKNNDNPLDNQFNENAYQSVELEIMNI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=516688 I6I31_RS00520 WP_115312941.1 96933..97328(-) (ssb) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
ATGCTAAATAAAATCGTAATAGTTGGTAGACTAACTAAAGATGCACAAATTTATGAGAAGGAGGAAAGTAAAGTAGCGAC
ATTTTGCGTCGCCACTGAAAGAAATTATAAAGATGAAAATAATGAAATATCAAGTGATTATTTAATATGTAAAGCTTTTG
GTAAAACTGCCACTAACATTGAAAAGTACACATCTCAAGGCACACTCGTAGGTATAACTGGTCAAATGCGTTCTAGAAAA
TATGAAAAAGAAGGACAGACGCATTTTGTAACTGAATTATACGTGGAAACTATAAAATTTATGTCCCCTAAAATGAAAAA
CAACGACAACCCCCTTGATAATCAATTTAACGAAAACGCTTATCAGTCAGTCGAATTAGAAATTATGAATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380H0S0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

84.404

83.206

0.702
  ssb Staphylococcus aureus MW2

83.486

83.206

0.695