Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6I32_RS08275 Genome accession   NZ_CP066041
Coordinates   1721022..1722254 (+) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716022..1727254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS08245 (I6I32_08245) galE 1716693..1717712 (+) 1020 WP_198464486.1 UDP-glucose 4-epimerase GalE -
  I6I32_RS08250 (I6I32_08250) - 1717714..1718680 (+) 967 Protein_1584 glycosyltransferase family 2 protein -
  I6I32_RS08255 (I6I32_08255) - 1718756..1718959 (-) 204 WP_002874767.1 ferredoxin -
  I6I32_RS08260 (I6I32_08260) - 1719005..1719511 (+) 507 WP_000410186.1 SAG1386/EF1546 family surface-associated protein -
  I6I32_RS08265 (I6I32_08265) cmk 1719521..1720195 (+) 675 WP_049505287.1 (d)CMP kinase -
  I6I32_RS08270 (I6I32_08270) - 1720314..1720820 (+) 507 WP_000162308.1 dihydrofolate reductase -
  I6I32_RS08275 (I6I32_08275) clpX 1721022..1722254 (+) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6I32_RS08280 (I6I32_08280) yihA 1722263..1722850 (+) 588 WP_198464487.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6I32_RS08285 (I6I32_08285) - 1722860..1723240 (+) 381 WP_198464488.1 RidA family protein -
  I6I32_RS08290 (I6I32_08290) rapZ 1723292..1724182 (+) 891 WP_125418293.1 RNase adapter RapZ -
  I6I32_RS08295 (I6I32_08295) - 1724179..1725156 (+) 978 WP_001231060.1 YvcK family protein -
  I6I32_RS08300 (I6I32_08300) whiA 1725153..1726064 (+) 912 WP_198464489.1 DNA-binding protein WhiA -
  I6I32_RS08305 (I6I32_08305) - 1726097..1727065 (-) 969 WP_198464490.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=516681 I6I32_RS08275 WP_002874765.1 1721022..1722254(+) (clpX) [Streptococcus oralis strain FDAARGOS_1075]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=516681 I6I32_RS08275 WP_002874765.1 1721022..1722254(+) (clpX) [Streptococcus oralis strain FDAARGOS_1075]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAGAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCCTAAATCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAAAAGTCAAATATCCTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACTTTGGCAA
AGAGCTTGAACGTGCCTTTCGCTATTGCAGATGCAACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGACGTTTCGGGTGAAGGAGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCACCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACC
AAGAATATCCTCTTCATCGTAGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGAGAAAAAGTCAT
CGGCTTTGGCCAAAATAACAAGGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTACCTGTCTTTGCAGCTCTTGAGCAATTGACGGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAGGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAGCCAATCCTAGAAACGGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563