Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZO13_RS06015 Genome accession   NZ_CP080056
Coordinates   1242532..1243269 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 18SZHZ655Rt     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237532..1248269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO13_RS05985 (KZO13_05995) yfiL 1237690..1238055 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KZO13_RS05990 (KZO13_06000) aroF 1238265..1239335 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZO13_RS05995 (KZO13_06005) tyrA 1239346..1240467 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZO13_RS06000 (KZO13_06010) pheA 1240510..1241670 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZO13_RS06005 (KZO13_06015) pheL 1241769..1241816 (-) 48 WP_010723158.1 phe operon leader peptide -
  KZO13_RS06010 (KZO13_06020) raiA 1241920..1242261 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KZO13_RS06015 (KZO13_06025) comL 1242532..1243269 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZO13_RS06020 (KZO13_06030) rluD 1243404..1244384 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZO13_RS06025 (KZO13_06035) yfiH 1244381..1245112 (+) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  KZO13_RS06030 (KZO13_06040) clpC 1245242..1247815 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=516529 KZO13_RS06015 WP_000197686.1 1242532..1243269(-) (comL) [Escherichia coli strain 18SZHZ655Rt]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=516529 KZO13_RS06015 WP_000197686.1 1242532..1243269(-) (comL) [Escherichia coli strain 18SZHZ655Rt]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376