Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6H77_RS06865 Genome accession   NZ_CP066021
Coordinates   1422953..1424185 (+) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417953..1429185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS06835 (I6H77_06835) galE 1418621..1419640 (+) 1020 WP_001156544.1 UDP-glucose 4-epimerase GalE -
  I6H77_RS06840 (I6H77_06840) - 1419624..1420608 (+) 985 Protein_1303 glycosyltransferase family 2 protein -
  I6H77_RS06845 (I6H77_06845) - 1420684..1420887 (-) 204 WP_002874767.1 ferredoxin -
  I6H77_RS06850 (I6H77_06850) - 1420933..1421442 (+) 510 WP_000410193.1 SAG1386/EF1546 family surface-associated protein -
  I6H77_RS06855 (I6H77_06855) cmk 1421452..1422126 (+) 675 WP_000849411.1 (d)CMP kinase -
  I6H77_RS06860 (I6H77_06860) - 1422245..1422751 (+) 507 WP_000162309.1 dihydrofolate reductase -
  I6H77_RS06865 (I6H77_06865) clpX 1422953..1424185 (+) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6H77_RS06870 (I6H77_06870) yihA 1424194..1424781 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6H77_RS06875 (I6H77_06875) - 1424791..1425171 (+) 381 WP_001140428.1 RidA family protein -
  I6H77_RS06880 (I6H77_06880) rapZ 1425223..1426113 (+) 891 WP_000163039.1 RNase adapter RapZ -
  I6H77_RS06885 (I6H77_06885) - 1426110..1427087 (+) 978 WP_001231065.1 YvcK family protein -
  I6H77_RS06890 (I6H77_06890) whiA 1427084..1427995 (+) 912 WP_000011271.1 DNA-binding protein WhiA -
  I6H77_RS06895 (I6H77_06895) - 1428027..1428995 (-) 969 WP_000081039.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=516490 I6H77_RS06865 WP_002874765.1 1422953..1424185(+) (clpX) [Streptococcus oralis strain FDAARGOS_1020]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=516490 I6H77_RS06865 WP_002874765.1 1422953..1424185(+) (clpX) [Streptococcus oralis strain FDAARGOS_1020]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TCTTGGCAGATTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTGAATCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCTGAAGA
TGTGGATTTGCAGAAGTCAAATATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACCTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATCGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAC
ATCCTCCTCAAACTATTGCAGGCTGCTGACTTTAATATCGAACGTGCAGAACGCGGGATTATCTACGTGGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCGGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTCGCTAGCGTGCCACCTCAAGGAGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACC
AAGAATATCCTCTTTATCGTAGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGTGAAAAAGTTAT
CGGTTTTGGCCAAAATAACAAGGCGATTGATGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAATGCCTTGGTGAAACAATACCAAACCTTACTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCCATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATCATTGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTTGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563