Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6H87_RS04315 Genome accession   NZ_CP066018
Coordinates   941933..942997 (-) Length   354 a.a.
NCBI ID   WP_010812222.1    Uniprot ID   G0EW38
Organism   Cupriavidus necator strain FDAARGOS_1030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936933..947997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H87_RS04290 (I6H87_04290) - 937348..938043 (-) 696 WP_011614569.1 TerC family protein -
  I6H87_RS04295 (I6H87_04295) sucD 938279..939160 (-) 882 WP_011614568.1 succinate--CoA ligase subunit alpha -
  I6H87_RS04300 (I6H87_04300) sucC 939260..940426 (-) 1167 WP_010812219.1 ADP-forming succinate--CoA ligase subunit beta -
  I6H87_RS04305 (I6H87_04305) - 940516..941211 (-) 696 WP_011614567.1 DUF2889 domain-containing protein -
  I6H87_RS04310 (I6H87_04310) recX 941355..941831 (-) 477 WP_011614566.1 recombination regulator RecX -
  I6H87_RS04315 (I6H87_04315) recA 941933..942997 (-) 1065 WP_010812222.1 recombinase RecA Machinery gene
  I6H87_RS04320 (I6H87_04320) - 943224..943913 (+) 690 WP_010812223.1 response regulator transcription factor -
  I6H87_RS04325 (I6H87_04325) - 943964..945520 (+) 1557 WP_037025083.1 sensor histidine kinase -
  I6H87_RS04330 (I6H87_04330) - 945517..945852 (+) 336 WP_010812225.1 DUF4212 domain-containing protein -
  I6H87_RS04335 (I6H87_04335) - 946096..947793 (+) 1698 WP_010812226.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37606.10 Da        Isoelectric Point: 5.0385

>NTDB_id=516409 I6H87_RS04315 WP_010812222.1 941933..942997(-) (recA) [Cupriavidus necator strain FDAARGOS_1030]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREYLRE
NPDIADEIENKVRAALGVVAMNPTAAATPVAVED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=516409 I6H87_RS04315 WP_010812222.1 941933..942997(-) (recA) [Cupriavidus necator strain FDAARGOS_1030]
ATGGACGACAAGAAGGCAGGTGCCGGCGTGAGCGCCGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCCTGGGCGACGGCGAGGTCGAGAAGGACATTCAGGTGGTATCCACCGGTTCGC
TCGGCCTGGACATCGCGCTTGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTATGGTCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCATGC
GCTGGACGTCAGCTACGCCAACAAGCTGGGCGTCAACGTCGGCGACCTGCTGATCTCGCAGCCGGACACCGGCGAACAGG
CGCTGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCGGCGCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCGGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCCGCGAAGC
CTTCTTCGACATCCTCTACGGCCAGGGCATCTCGCGCCAGGGCGAGATCATCGACCTGGGCGTGGACGCCAAGATCGTCG
AGAAGTCCGGCGCCTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAG
AACCCTGACATCGCCGACGAAATCGAGAACAAGGTGCGCGCGGCGCTGGGCGTGGTGGCCATGAACCCCACGGCGGCTGC
CACGCCGGTAGCGGTCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0EW38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.714

98.87

0.847
  recA Pseudomonas stutzeri DSM 10701

74.556

95.48

0.712
  recA Acinetobacter baylyi ADP1

73.574

94.068

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.938

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.727

93.22

0.678
  recA Vibrio cholerae strain A1552

72.727

93.22

0.678
  recA Glaesserella parasuis strain SC1401

70.501

95.763

0.675
  recA Acinetobacter baumannii D1279779

72.34

92.938

0.672
  recA Helicobacter pylori 26695

65.653

92.938

0.61
  recA Helicobacter pylori strain NCTC11637

65.35

92.938

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

92.938

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.938

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

65.031

92.09

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.373

0.596
  recA Lactococcus lactis subsp. cremoris KW2

62.349

93.785

0.585
  recA Streptococcus pyogenes NZ131

59.249

97.74

0.579
  recA Streptococcus mutans UA159

61.012

94.915

0.579
  recA Streptococcus mitis NCTC 12261

61.747

93.785

0.579
  recA Streptococcus pneumoniae Rx1

61.446

93.785

0.576
  recA Streptococcus pneumoniae D39

61.446

93.785

0.576
  recA Streptococcus pneumoniae R6

61.446

93.785

0.576
  recA Streptococcus pneumoniae TIGR4

61.446

93.785

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.808

0.573
  recA Streptococcus mitis SK321

61.145

93.785

0.573