Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | THIVI_RS01170 | Genome accession | NC_018012 |
| Coordinates | 250242..251498 (-) | Length | 418 a.a. |
| NCBI ID | WP_014776818.1 | Uniprot ID | I3Y5P2 |
| Organism | Thiocystis violascens DSM 198 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 245242..256498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THIVI_RS01150 (Thivi_0237) | - | 246279..248159 (+) | 1881 | WP_014776814.1 | phosphoenolpyruvate carboxykinase (GTP) | - |
| THIVI_RS01155 (Thivi_0238) | - | 248285..248554 (-) | 270 | WP_014776815.1 | hypothetical protein | - |
| THIVI_RS01160 (Thivi_0239) | coaE | 248648..249247 (-) | 600 | WP_014776816.1 | dephospho-CoA kinase | - |
| THIVI_RS01165 (Thivi_0240) | pilD | 249334..250236 (-) | 903 | WP_014776817.1 | A24 family peptidase | Machinery gene |
| THIVI_RS01170 (Thivi_0241) | pilC | 250242..251498 (-) | 1257 | WP_014776818.1 | type II secretion system F family protein | Machinery gene |
| THIVI_RS01175 (Thivi_0242) | pilB | 251519..253234 (-) | 1716 | WP_014776819.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| THIVI_RS01180 (Thivi_0243) | - | 253248..254081 (-) | 834 | WP_014776820.1 | NYN domain-containing protein | - |
| THIVI_RS01185 (Thivi_0244) | acs | 254349..256295 (-) | 1947 | WP_014776821.1 | acetate--CoA ligase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45362.72 Da Isoelectric Point: 9.9818
>NTDB_id=51639 THIVI_RS01170 WP_014776818.1 250242..251498(-) (pilC) [Thiocystis violascens DSM 198]
MALAVASKVKPKPKAEAEKARVFAWEGMDRRGAKVKGETRAANINLVRADLRRQGVNPTKVKMKPKPLLGGGKKKITSAD
LSIFTRQLATMMGAGVPLVQAFDIVGRGHENPSMQDLILSIKADIESGTAMALALGKHPLYFDDLVCNLVAAGEQAGILD
NLLDKIAVYKEKTESIKGKIKKAMFYPTAVIGVAVIVTVVILLFVIPQFKELFSSFGADLPAFTLMVIGLSDLLKEWWWA
FFMGIGGFIYSFGYAYKRSRGMREAIDRIVLKIPIIGTILNKAAIARFARTLSTMFAAGVPLVEALQSVSGATGNIVYQD
AVLKMREEVATGQSLQLAMRQRDLFPHMVIQMTAIGEESGALDSMLAKVADFYEEQVDNAVDSLSSLLEPMIMVVIGGLV
GSLVVAMYLPIFKLASVV
MALAVASKVKPKPKAEAEKARVFAWEGMDRRGAKVKGETRAANINLVRADLRRQGVNPTKVKMKPKPLLGGGKKKITSAD
LSIFTRQLATMMGAGVPLVQAFDIVGRGHENPSMQDLILSIKADIESGTAMALALGKHPLYFDDLVCNLVAAGEQAGILD
NLLDKIAVYKEKTESIKGKIKKAMFYPTAVIGVAVIVTVVILLFVIPQFKELFSSFGADLPAFTLMVIGLSDLLKEWWWA
FFMGIGGFIYSFGYAYKRSRGMREAIDRIVLKIPIIGTILNKAAIARFARTLSTMFAAGVPLVEALQSVSGATGNIVYQD
AVLKMREEVATGQSLQLAMRQRDLFPHMVIQMTAIGEESGALDSMLAKVADFYEEQVDNAVDSLSSLLEPMIMVVIGGLV
GSLVVAMYLPIFKLASVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=51639 THIVI_RS01170 WP_014776818.1 250242..251498(-) (pilC) [Thiocystis violascens DSM 198]
ATGGCACTGGCAGTCGCAAGCAAGGTCAAACCGAAACCCAAGGCCGAGGCCGAAAAAGCCCGTGTCTTTGCCTGGGAGGG
CATGGATCGGCGCGGAGCCAAGGTCAAGGGCGAGACTCGCGCGGCCAATATCAATCTGGTGCGGGCCGATCTGCGCCGCC
AGGGCGTGAACCCGACCAAGGTCAAGATGAAGCCCAAGCCGCTGCTGGGCGGCGGCAAGAAAAAGATCACCAGCGCGGAT
CTTTCGATCTTCACCCGCCAGTTGGCCACTATGATGGGCGCGGGCGTCCCCTTGGTGCAGGCCTTCGATATCGTTGGACG
CGGCCACGAAAACCCCTCGATGCAGGATCTGATCCTGTCCATCAAGGCGGACATCGAGAGCGGCACAGCGATGGCGCTGG
CCCTGGGCAAGCATCCGCTCTACTTCGACGATCTGGTTTGCAACCTGGTCGCCGCTGGCGAGCAGGCCGGTATCCTCGAC
AATCTGCTCGACAAGATCGCGGTCTATAAGGAAAAGACAGAGTCCATCAAGGGCAAGATCAAGAAGGCCATGTTCTACCC
GACCGCCGTCATCGGGGTGGCCGTGATCGTGACCGTGGTTATCCTGCTGTTTGTCATCCCGCAGTTCAAGGAACTCTTTT
CCAGTTTCGGCGCGGATTTGCCCGCATTCACCCTGATGGTCATCGGACTCTCCGATCTCCTCAAGGAATGGTGGTGGGCC
TTCTTCATGGGCATCGGCGGCTTCATCTACAGCTTCGGCTATGCCTACAAGCGCTCGCGGGGAATGCGCGAGGCGATCGA
TCGCATCGTCCTGAAGATCCCAATCATCGGCACCATCCTGAACAAGGCCGCCATCGCCCGTTTCGCGCGCACCCTCTCCA
CCATGTTCGCCGCGGGCGTACCGCTGGTGGAGGCGCTCCAGTCGGTCTCGGGCGCGACCGGCAACATCGTCTATCAGGAT
GCCGTTCTGAAGATGCGCGAGGAGGTCGCCACCGGCCAATCGCTGCAGTTGGCCATGCGTCAGCGCGACCTCTTCCCCCA
CATGGTGATCCAGATGACCGCCATCGGCGAGGAATCGGGCGCGCTCGACTCGATGCTGGCCAAGGTGGCCGATTTCTACG
AGGAACAGGTGGATAACGCGGTGGACAGCCTGAGCAGCCTGCTCGAACCCATGATCATGGTCGTCATCGGCGGTCTGGTC
GGCAGTTTGGTCGTTGCCATGTATCTGCCCATCTTCAAACTCGCGTCGGTGGTCTGA
ATGGCACTGGCAGTCGCAAGCAAGGTCAAACCGAAACCCAAGGCCGAGGCCGAAAAAGCCCGTGTCTTTGCCTGGGAGGG
CATGGATCGGCGCGGAGCCAAGGTCAAGGGCGAGACTCGCGCGGCCAATATCAATCTGGTGCGGGCCGATCTGCGCCGCC
AGGGCGTGAACCCGACCAAGGTCAAGATGAAGCCCAAGCCGCTGCTGGGCGGCGGCAAGAAAAAGATCACCAGCGCGGAT
CTTTCGATCTTCACCCGCCAGTTGGCCACTATGATGGGCGCGGGCGTCCCCTTGGTGCAGGCCTTCGATATCGTTGGACG
CGGCCACGAAAACCCCTCGATGCAGGATCTGATCCTGTCCATCAAGGCGGACATCGAGAGCGGCACAGCGATGGCGCTGG
CCCTGGGCAAGCATCCGCTCTACTTCGACGATCTGGTTTGCAACCTGGTCGCCGCTGGCGAGCAGGCCGGTATCCTCGAC
AATCTGCTCGACAAGATCGCGGTCTATAAGGAAAAGACAGAGTCCATCAAGGGCAAGATCAAGAAGGCCATGTTCTACCC
GACCGCCGTCATCGGGGTGGCCGTGATCGTGACCGTGGTTATCCTGCTGTTTGTCATCCCGCAGTTCAAGGAACTCTTTT
CCAGTTTCGGCGCGGATTTGCCCGCATTCACCCTGATGGTCATCGGACTCTCCGATCTCCTCAAGGAATGGTGGTGGGCC
TTCTTCATGGGCATCGGCGGCTTCATCTACAGCTTCGGCTATGCCTACAAGCGCTCGCGGGGAATGCGCGAGGCGATCGA
TCGCATCGTCCTGAAGATCCCAATCATCGGCACCATCCTGAACAAGGCCGCCATCGCCCGTTTCGCGCGCACCCTCTCCA
CCATGTTCGCCGCGGGCGTACCGCTGGTGGAGGCGCTCCAGTCGGTCTCGGGCGCGACCGGCAACATCGTCTATCAGGAT
GCCGTTCTGAAGATGCGCGAGGAGGTCGCCACCGGCCAATCGCTGCAGTTGGCCATGCGTCAGCGCGACCTCTTCCCCCA
CATGGTGATCCAGATGACCGCCATCGGCGAGGAATCGGGCGCGCTCGACTCGATGCTGGCCAAGGTGGCCGATTTCTACG
AGGAACAGGTGGATAACGCGGTGGACAGCCTGAGCAGCCTGCTCGAACCCATGATCATGGTCGTCATCGGCGGTCTGGTC
GGCAGTTTGGTCGTTGCCATGTATCTGCCCATCTTCAAACTCGCGTCGGTGGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.343 |
94.737 |
0.562 |
| pilC | Pseudomonas stutzeri DSM 10701 |
57.072 |
96.411 |
0.55 |
| pilC | Acinetobacter baumannii D1279779 |
55.446 |
96.651 |
0.536 |
| pilC | Acinetobacter baylyi ADP1 |
55.528 |
95.215 |
0.529 |
| pilG | Neisseria meningitidis 44/76-A |
46.059 |
97.129 |
0.447 |
| pilG | Neisseria gonorrhoeae MS11 |
46.059 |
97.129 |
0.447 |
| pilC | Vibrio campbellii strain DS40M4 |
40.741 |
96.89 |
0.395 |
| pilC | Vibrio cholerae strain A1552 |
41.414 |
94.737 |
0.392 |
| pilC | Thermus thermophilus HB27 |
38.366 |
96.651 |
0.371 |