Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I25_RS10955 Genome accession   NZ_CP066013
Coordinates   2185550..2186086 (-) Length   178 a.a.
NCBI ID   WP_198456332.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_1068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2180550..2191086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I25_RS10925 (I6I25_10935) - 2180930..2181133 (+) 204 WP_002506083.1 hypothetical protein -
  I6I25_RS10930 (I6I25_10940) - 2181287..2182588 (-) 1302 WP_198456329.1 N-acetylmuramoyl-L-alanine amidase -
  I6I25_RS10935 (I6I25_10945) - 2182805..2182993 (-) 189 WP_002506085.1 hypothetical protein -
  I6I25_RS10940 (I6I25_10950) - 2183605..2184243 (+) 639 WP_198456330.1 hypothetical protein -
  I6I25_RS13405 (I6I25_10955) - 2184309..2184506 (-) 198 WP_107513975.1 hypothetical protein -
  I6I25_RS10945 (I6I25_10960) - 2184519..2184875 (-) 357 WP_198456331.1 hypothetical protein -
  I6I25_RS10950 (I6I25_10965) rpsR 2185256..2185498 (-) 243 WP_002506086.1 30S ribosomal protein S18 -
  I6I25_RS10955 (I6I25_10970) ssbA 2185550..2186086 (-) 537 WP_198456332.1 single-stranded DNA-binding protein Machinery gene
  I6I25_RS10960 (I6I25_10975) rpsF 2186106..2186411 (-) 306 WP_002511967.1 30S ribosomal protein S6 -
  I6I25_RS10965 (I6I25_10980) - 2186814..2187608 (+) 795 WP_056935168.1 GH25 family lysozyme -
  I6I25_RS10970 (I6I25_10985) ychF 2188496..2189593 (-) 1098 WP_002511965.1 redox-regulated ATPase YchF -
  I6I25_RS10975 (I6I25_10990) - 2189593..2189808 (-) 216 WP_002506091.1 DUF951 domain-containing protein -
  I6I25_RS10980 (I6I25_10995) - 2189830..2190714 (-) 885 WP_198456333.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19900.43 Da        Isoelectric Point: 5.2149

>NTDB_id=516340 I6I25_RS10955 WP_198456332.1 2185550..2186086(-) (ssbA) [Staphylococcus equorum strain FDAARGOS_1068]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQAGQNTSSYQNNNQNNNNNNNNNNSSNKNNQSDN
PFANANGPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=516340 I6I25_RS10955 WP_198456332.1 2185550..2186086(-) (ssbA) [Staphylococcus equorum strain FDAARGOS_1068]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGACGTCGTATATTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAAGCAGGTCAAAATACGTCAT
CTTATCAAAACAATAACCAAAACAACAACAATAATAATAATAACAACAATTCATCAAACAAAAATAATCAATCGGATAAT
CCATTTGCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.773

100

0.618
  ssb Latilactobacillus sakei subsp. sakei 23K

51.955

100

0.522