Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6I17_RS05685 Genome accession   NZ_CP065999
Coordinates   1132148..1132954 (-) Length   268 a.a.
NCBI ID   WP_003781085.1    Uniprot ID   F0EWH6
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1127148..1137954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS05670 (I6I17_05670) - 1127486..1128742 (-) 1257 WP_040564136.1 D-amino acid dehydrogenase -
  I6I17_RS11645 - 1129047..1129172 (+) 126 WP_257004549.1 hypothetical protein -
  I6I17_RS05675 (I6I17_05675) lpdA 1129228..1131027 (-) 1800 WP_040564138.1 dihydrolipoyl dehydrogenase -
  I6I17_RS05680 (I6I17_05680) folP 1131133..1131972 (-) 840 WP_003781083.1 dihydropteroate synthase -
  I6I17_RS05685 (I6I17_05685) comL 1132148..1132954 (-) 807 WP_003781085.1 outer membrane protein assembly factor BamD Machinery gene
  I6I17_RS05690 (I6I17_05690) - 1133320..1133520 (+) 201 WP_003781086.1 hypothetical protein -
  I6I17_RS05695 (I6I17_05695) trpB 1133654..1134853 (+) 1200 WP_003781089.1 tryptophan synthase subunit beta -
  I6I17_RS05700 (I6I17_05700) - 1134926..1135261 (+) 336 WP_147285365.1 hypothetical protein -
  I6I17_RS05705 (I6I17_05705) - 1135495..1136685 (+) 1191 WP_003781094.1 hypothetical protein -
  I6I17_RS05710 (I6I17_05710) - 1136740..1137918 (+) 1179 WP_003781096.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31098.99 Da        Isoelectric Point: 9.5120

>NTDB_id=516251 I6I17_RS05685 WP_003781085.1 1132148..1132954(-) (comL) [Kingella denitrificans strain FDAARGOS_1060]
MKKIVAASIVMAILSACATPNATVSKDAQMSKDWSNDRLYSEARNALNSGNYSHANALYGVLRARQPDGRYTEQSLLDSA
YAHYKNEEMSQALALLSRFERNYPASVDMDYALYLKGLIFFAEDQSFLRKLASQDWSDRDPEANRRAFRVFEQLVNRFPQ
SKYAEDSRRRMAQLVDALGGHEIAIARYYAKRHAYVAANNRAQRVLQQYQNTRYVEEALAIMIFSYEKMGNTQLADDTRR
VLQQNFANSPYLAKSWQPDDIPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=516251 I6I17_RS05685 WP_003781085.1 1132148..1132954(-) (comL) [Kingella denitrificans strain FDAARGOS_1060]
ATGAAAAAAATCGTTGCCGCTTCCATTGTTATGGCAATACTTTCGGCGTGCGCCACACCGAACGCCACGGTCAGCAAAGA
CGCGCAAATGAGCAAAGACTGGTCGAACGACCGCCTGTATAGCGAAGCGCGGAATGCTTTGAACAGCGGGAACTACAGCC
ATGCCAATGCGTTGTACGGCGTATTGCGCGCCCGCCAGCCGGACGGCCGCTACACGGAGCAATCGTTGCTGGATTCCGCA
TACGCGCATTACAAAAATGAAGAAATGTCACAGGCTTTGGCGCTTCTGTCGCGTTTCGAACGCAATTATCCGGCCAGTGT
GGACATGGATTATGCTTTGTATCTGAAAGGCTTGATTTTCTTCGCGGAAGACCAATCCTTCCTGCGCAAACTGGCATCGC
AAGACTGGTCCGACCGCGACCCGGAAGCCAACCGCCGTGCGTTCCGTGTGTTTGAGCAGTTGGTCAATCGCTTCCCGCAA
AGCAAATATGCGGAAGATTCGCGCCGCCGCATGGCGCAGCTGGTGGATGCTTTGGGCGGCCACGAAATCGCCATCGCGCG
TTATTACGCCAAACGCCATGCTTATGTGGCGGCCAACAACCGCGCGCAACGCGTGTTGCAGCAATATCAGAACACGCGCT
ATGTAGAAGAAGCCTTGGCCATCATGATTTTCAGCTACGAAAAAATGGGCAATACGCAACTGGCGGACGATACGCGCCGC
GTGTTGCAGCAAAACTTTGCCAACAGCCCTTATCTGGCCAAATCTTGGCAGCCGGACGATATCCCCTGGTGGCGCTGGTG
GAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0EWH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

58.052

99.627

0.578
  comL Neisseria meningitidis MC58

57.678

99.627

0.575