Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H90_RS04955 Genome accession   NZ_CP065995
Coordinates   994678..995244 (+) Length   188 a.a.
NCBI ID   WP_002815494.1    Uniprot ID   A0A223XQS1
Organism   Leuconostoc mesenteroides strain FDAARGOS_1033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 989678..1000244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H90_RS04935 (I6H90_04935) - 990158..991834 (+) 1677 WP_011680506.1 DUF3744 domain-containing protein -
  I6H90_RS04940 (I6H90_04940) - 991836..992663 (+) 828 WP_011680505.1 energy-coupling factor transporter transmembrane component T -
  I6H90_RS04945 (I6H90_04945) pepV 992660..994090 (+) 1431 WP_011680504.1 dipeptidase PepV -
  I6H90_RS04950 (I6H90_04950) rpsF 994348..994644 (+) 297 WP_011680503.1 30S ribosomal protein S6 -
  I6H90_RS04955 (I6H90_04955) ssb 994678..995244 (+) 567 WP_002815494.1 single-stranded DNA-binding protein Machinery gene
  I6H90_RS04960 (I6H90_04960) rpsR 995277..995561 (+) 285 WP_004911134.1 30S ribosomal protein S18 -
  I6H90_RS04965 (I6H90_04965) - 995731..997758 (+) 2028 WP_011680502.1 DHH family phosphoesterase -
  I6H90_RS04970 (I6H90_04970) rplI 997775..998227 (+) 453 WP_011680501.1 50S ribosomal protein L9 -
  I6H90_RS04975 (I6H90_04975) dnaB 998229..999692 (+) 1464 WP_002815498.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20159.69 Da        Isoelectric Point: 4.5478

>NTDB_id=516170 I6H90_RS04955 WP_002815494.1 994678..995244(+) (ssb) [Leuconostoc mesenteroides strain FDAARGOS_1033]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=516170 I6H90_RS04955 WP_002815494.1 994678..995244(+) (ssb) [Leuconostoc mesenteroides strain FDAARGOS_1033]
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCCGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTTGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGACAACTCATTTAACGGTGTTGATCCTTTTGCAAGTGCGAGTTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223XQS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.766

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.596

100

0.516