Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   I6H76_RS04025 Genome accession   NZ_CP065994
Coordinates   797542..798588 (-) Length   348 a.a.
NCBI ID   WP_006530951.1    Uniprot ID   A0A380KKY9
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 792542..803588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS04020 (I6H76_04020) amiF 796610..797542 (-) 933 WP_006530952.1 ABC transporter ATP-binding protein Regulator
  I6H76_RS04025 (I6H76_04025) oppD 797542..798588 (-) 1047 WP_006530951.1 ABC transporter ATP-binding protein Regulator
  I6H76_RS04030 (I6H76_04030) - 798600..799631 (-) 1032 WP_074565183.1 ABC transporter permease -
  I6H76_RS04035 (I6H76_04035) - 799643..800557 (-) 915 WP_006530948.1 ABC transporter permease -
  I6H76_RS04040 (I6H76_04040) - 800670..802325 (-) 1656 WP_115283730.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38685.24 Da        Isoelectric Point: 4.8688

>NTDB_id=516123 I6H76_RS04025 WP_006530951.1 797542..798588(-) (oppD) [Streptococcus infantarius strain FDAARGOS_1019]
MSEETILQVKNLHVDFQTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWDRALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKERGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPKVTPPLPIQKRWTKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=516123 I6H76_RS04025 WP_006530951.1 797542..798588(-) (oppD) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCAAACCTACGCTGGAGAAATTAAAGCCATTCG
AGACGTCAACTTTGACTTGAAGAAAGGCGAAACACTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACAACTA
AAACATTAATGGGGTTATCTGCTTCAAATGCTACTATTACAGGTGACATTGACTTTAAAGGTAAAAAACTTACTGAATTA
AAAGAAGACGAATGGATTAAAGTTCGTGGAAATGAAATCGCAATGATTTTCCAAGATCCAATGACGAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCCGAACCAATCATGATCCACGAAAAAGTTTCAAAACAAGAAGCTTGGGATCGTGCAC
TTGATTTAATGAAGAACGTTGGTATTCCAAATGCAGAAGAACATATCAACGATTACCCACACCAATGGTCTGGTGGTATG
CGTCAACGTGCTGTTATTGCAATCGCGCTTGCTGCTAACCCGGATGTCTTGATTGCTGACGAACCAACAACTGCCTTGGA
TGTTACTATTCAAGCTCAAATTCTTAACTTGATGAAAAAAATTCAAAAAGAACGTGGTTCATCAATCATCTTTATCACCC
ACGACCTTGGTGTTGTTGCTGGTATGGCTGATCGTGTAGCAGTTATGTATGCTGGTAAAGTTATTGAATATGGAACAGTT
GACGAAGTCTTCTACAACCCGCAACACCCATATACTTGGGGGTTGTTGAACTCAATGCCAACAACTGATACAGAAGCTGG
TAGCTTACAATCAATTCCAGGTACACCACCAGATCTTCTTAACCCGCCAAAAGGTGATGCTTTTGCACCACGTAACGAAT
TTGCTTTGGATATCGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGACACACACTATGCTGCAACTTGGTTGTTA
GACGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGACAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380KKY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

57.31

98.276

0.563
  amiE Streptococcus thermophilus LMG 18311

57.91

96.264

0.557
  amiE Streptococcus thermophilus LMD-9

57.91

96.264

0.557