Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6H76_RS04020 Genome accession   NZ_CP065994
Coordinates   796610..797542 (-) Length   310 a.a.
NCBI ID   WP_006530952.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 791610..802542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS04020 (I6H76_04020) amiF 796610..797542 (-) 933 WP_006530952.1 ABC transporter ATP-binding protein Regulator
  I6H76_RS04025 (I6H76_04025) oppD 797542..798588 (-) 1047 WP_006530951.1 ABC transporter ATP-binding protein Regulator
  I6H76_RS04030 (I6H76_04030) - 798600..799631 (-) 1032 WP_074565183.1 ABC transporter permease -
  I6H76_RS04035 (I6H76_04035) - 799643..800557 (-) 915 WP_006530948.1 ABC transporter permease -
  I6H76_RS04040 (I6H76_04040) - 800670..802325 (-) 1656 WP_115283730.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35027.85 Da        Isoelectric Point: 5.8646

>NTDB_id=516122 I6H76_RS04020 WP_006530952.1 796610..797542(-) (amiF) [Streptococcus infantarius strain FDAARGOS_1019]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISGGEIDFNGETVSNL
KGKKLHEFRKNVQMIFQDPQASLNARMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKCLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQAYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKNALS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=516122 I6H76_RS04020 WP_006530952.1 796610..797542(-) (amiF) [Streptococcus infantarius strain FDAARGOS_1019]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCTATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATTTTAAAACTTTACGATATTAGTGGTGGTGAAATCGACTTTAACGGAGAAACGGTTTCTAACCTT
AAAGGTAAAAAACTACATGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGATCCACAAGCCAGTCTTAATGCACGTAT
GAAAATCCGTGATATCGTTGCTGAAGGTCTTGATATTCACAAACTTGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTGCTTTCTCTAGTAGGTTTGAACAAAGATCACATGACTCGTTACCCACACGAATTTTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAACTTCAACGCGAAAAATGCTTAACTTACCTCTTCATCGCTCACGATT
TGTCAATGGTTAAATACATTTCAGATCGTATTGGAGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAACAATCCAATTCACCCATATACTAAAAGTCTGTTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGTGTACACCAAGCTTATGATCCAAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATCACACCAGGACATT
TTGTACTTTCTACAGAAGCAGAAGCAGAAGAATACAAAAACGCATTATCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.446

97.742

0.542
  amiF Streptococcus thermophilus LMG 18311

55.116

97.742

0.539
  amiF Streptococcus salivarius strain HSISS4

54.785

97.742

0.535