Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H60_RS00530 Genome accession   NZ_CP065993
Coordinates   101476..102039 (+) Length   187 a.a.
NCBI ID   WP_139968538.1    Uniprot ID   -
Organism   Leuconostoc pseudomesenteroides strain FDAARGOS_1003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 96476..107039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H60_RS00510 (I6H60_00510) - 97036..98712 (+) 1677 WP_010278737.1 DUF3744 domain-containing protein -
  I6H60_RS00515 (I6H60_00515) - 98714..99541 (+) 828 WP_010278733.1 energy-coupling factor transporter transmembrane component T -
  I6H60_RS00520 (I6H60_00520) pepV 99523..100968 (+) 1446 WP_010278729.1 dipeptidase PepV -
  I6H60_RS00525 (I6H60_00525) rpsF 101148..101444 (+) 297 WP_004911142.1 30S ribosomal protein S6 -
  I6H60_RS00530 (I6H60_00530) ssb 101476..102039 (+) 564 WP_139968538.1 single-stranded DNA-binding protein Machinery gene
  I6H60_RS00535 (I6H60_00535) rpsR 102072..102356 (+) 285 WP_139968539.1 30S ribosomal protein S18 -
  I6H60_RS00540 (I6H60_00540) - 102484..104511 (+) 2028 WP_010296104.1 DHH family phosphoesterase -
  I6H60_RS00545 (I6H60_00545) rplI 104522..104974 (+) 453 WP_010296101.1 50S ribosomal protein L9 -
  I6H60_RS00550 (I6H60_00550) dnaB 104976..106439 (+) 1464 WP_010296097.1 replicative DNA helicase -
  I6H60_RS00555 (I6H60_00555) - 106461..107009 (-) 549 WP_147651150.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20049.71 Da        Isoelectric Point: 4.6961

>NTDB_id=516080 I6H60_RS00530 WP_139968538.1 101476..102039(+) (ssb) [Leuconostoc pseudomesenteroides strain FDAARGOS_1003]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAIEGRLQTR
NYENNAGQRVYVTEVVADNFSLLESRAESEKRRAQNGSSNSNAGGYNNGSNDHSFGGNDNSFSGVDPFASANQGSANKSA
AAEKDAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=516080 I6H60_RS00530 WP_139968538.1 101476..102039(+) (ssb) [Leuconostoc pseudomesenteroides strain FDAARGOS_1003]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGCGATGTGGAATTACGTTATACCCAATCGGGTGTAGCTGTCGG
CACGTTTAGCTTGGCGGTTAACCGTCAGTTCACTAACGCAAGTGGTGAACGCGAAGCTGACTTTATTAACGCAGTTATTT
GGCGTAAAGCAGCTGAAAATTTTGCTAACTTCACTGGAAAAGGCGCACTTGTTGCGATTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAACAATGCAGGTCAACGTGTTTACGTGACCGAAGTTGTTGCGGATAATTTCTCATTACTAGAATCCCGTGC
TGAAAGTGAAAAGCGTCGTGCACAAAACGGCTCTTCAAATAGCAATGCGGGTGGCTATAATAATGGTTCAAATGATCATT
CATTTGGCGGTAATGATAATTCGTTTAGTGGTGTTGATCCTTTTGCTAGTGCGAACCAAGGTTCAGCTAACAAGTCAGCA
GCCGCTGAAAAAGATGCACCTAACCCATTTGCGGCTAGTGGCAACACTGAAATTGATATATCAGATGATGATTTACCATT
TTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.567

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.66

100

0.529