Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   I6H57_RS02170 Genome accession   NZ_CP065991
Coordinates   452526..453242 (+) Length   238 a.a.
NCBI ID   WP_080553589.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447526..458242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS02145 (I6H57_02145) thiP 447649..449253 (+) 1605 WP_005695658.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -
  I6H57_RS02150 (I6H57_02150) thiQ 449246..449875 (+) 630 WP_005695661.1 thiamine ABC transporter ATP-binding protein -
  I6H57_RS02155 (I6H57_02155) bioB 449949..450965 (+) 1017 WP_005695662.1 biotin synthase BioB -
  I6H57_RS02160 (I6H57_02160) suhB 451011..451811 (-) 801 WP_005695663.1 inositol-1-monophosphatase -
  I6H57_RS02165 (I6H57_02165) comN 452011..452529 (+) 519 WP_005695664.1 hypothetical protein Machinery gene
  I6H57_RS02170 (I6H57_02170) comO 452526..453242 (+) 717 WP_080553589.1 type II secretion system protein J Machinery gene
  I6H57_RS02175 (I6H57_02175) comP 453239..453925 (+) 687 WP_005695666.1 DUF2572 family protein Machinery gene
  I6H57_RS02180 (I6H57_02180) comQ 453939..454205 (+) 267 WP_005699425.1 DUF5374 domain-containing protein Machinery gene
  I6H57_RS02185 (I6H57_02185) recC 454243..457602 (+) 3360 WP_005695669.1 exodeoxyribonuclease V subunit gamma -
  I6H57_RS02190 (I6H57_02190) nrdR 457680..458129 (+) 450 WP_005695670.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26733.88 Da        Isoelectric Point: 7.5531

>NTDB_id=516026 I6H57_RS02170 WP_080553589.1 452526..453242(+) (comO) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRATNPKLIEDNLAL
FELDEKGTAIIIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNEKMIETKQTYKNAV
NADCRSAECQRALAQFTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLTGHLAAYKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=516026 I6H57_RS02170 WP_080553589.1 452526..453242(+) (comO) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTGTTGCTATTGGTTGC
ACAGTTTTATGCTCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAATTACAAGCGGAATTACAACGTACTA
TTCAACTCATCGGTAAAGATCTGCGTCGCGTAGGCTTTCGAGCCACAAACCCAAAACTAATCGAGGATAATCTGGCTTTA
TTTGAATTAGACGAAAAGGGCACAGCAATAATCATTGCTCAAGCAGACAATGCTCCATCAAATAGCTGCGTCTTATTTTT
TTATGATTTAAATAGTAATGGCTGTATTGGTGAAAAATACACAAAAAACACCTGCGTAAACGGTGTTAAAAATGTGGCAA
AAAATATCGAAAAAGAGCTGTTTGGTTACAAACTTAACGAGAAAATGATCGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCGGATTGTCGTTCAGCAGAGTGTCAGAGAGCCTTAGCTCAATTTACTTGTAACGCCGGTGGGGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATTAAACTCA
CAGGGCATCTTGCCGCATATAAGCATATTCAATATGAAACTTCGCTTGTAGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.393

98.319

0.613