Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   I6H57_RS02175 Genome accession   NZ_CP065991
Coordinates   453239..453925 (+) Length   228 a.a.
NCBI ID   WP_005695666.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448239..458925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS02150 (I6H57_02150) thiQ 449246..449875 (+) 630 WP_005695661.1 thiamine ABC transporter ATP-binding protein -
  I6H57_RS02155 (I6H57_02155) bioB 449949..450965 (+) 1017 WP_005695662.1 biotin synthase BioB -
  I6H57_RS02160 (I6H57_02160) suhB 451011..451811 (-) 801 WP_005695663.1 inositol-1-monophosphatase -
  I6H57_RS02165 (I6H57_02165) comN 452011..452529 (+) 519 WP_005695664.1 hypothetical protein Machinery gene
  I6H57_RS02170 (I6H57_02170) comO 452526..453242 (+) 717 WP_080553589.1 type II secretion system protein J Machinery gene
  I6H57_RS02175 (I6H57_02175) comP 453239..453925 (+) 687 WP_005695666.1 DUF2572 family protein Machinery gene
  I6H57_RS02180 (I6H57_02180) comQ 453939..454205 (+) 267 WP_005699425.1 DUF5374 domain-containing protein Machinery gene
  I6H57_RS02185 (I6H57_02185) recC 454243..457602 (+) 3360 WP_005695669.1 exodeoxyribonuclease V subunit gamma -
  I6H57_RS02190 (I6H57_02190) nrdR 457680..458129 (+) 450 WP_005695670.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25693.63 Da        Isoelectric Point: 8.4292

>NTDB_id=516027 I6H57_RS02175 WP_005695666.1 453239..453925(+) (comP) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MMMKKGIVTLTALILLSGLLALILLFDEQIFAFFRSQMSQRKYYVEQSLALQKISQQQQKHICQNLPLNGAEKVKQVFFE
SSGAEDKVAYSVWCERAELFKKSPTKGINENMLRDFISSEKQTDFQPHFVKVDTTLTAQKTPQVYWMTQNQLEVKGNVSG
ILLAEGDLTLTGKGRISGAVITGGLLKLEENVTVAYGKAVVTKLVQEYSQWRLVDKSWSDLSAQDQSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=516027 I6H57_RS02175 WP_005695666.1 453239..453925(+) (comP) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGATGATGAAAAAAGGGATTGTGACACTGACGGCACTGATTTTACTTTCAGGCTTATTGGCGCTGATCTTATTATTTGA
TGAACAGATCTTTGCGTTTTTTCGATCTCAAATGAGTCAGCGAAAATATTATGTAGAACAAAGCCTTGCGTTACAGAAAA
TCAGTCAGCAGCAACAAAAACATATTTGCCAAAACTTGCCTTTAAATGGTGCTGAAAAAGTGAAACAAGTCTTTTTCGAG
TCTTCAGGGGCAGAGGATAAAGTCGCCTATTCTGTTTGGTGTGAACGCGCTGAGTTATTTAAGAAATCGCCCACAAAAGG
CATTAATGAAAATATGCTGCGAGATTTTATTTCCAGTGAAAAACAAACTGATTTTCAACCGCACTTTGTGAAAGTAGATA
CTACTTTAACTGCTCAAAAAACACCACAAGTGTATTGGATGACGCAAAACCAATTAGAAGTTAAAGGGAATGTAAGTGGT
ATTCTGCTAGCAGAAGGAGATTTAACTTTAACAGGCAAAGGGCGTATTAGTGGTGCAGTGATTACAGGTGGTTTGCTTAA
GTTAGAGGAGAATGTGACGGTAGCTTACGGTAAAGCTGTGGTGACAAAACTCGTACAAGAATATAGCCAATGGCGTTTGG
TGGATAAAAGTTGGAGTGATTTAAGTGCGCAAGATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

52.193

100

0.522