Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KZH42_RS10330 Genome accession   NZ_CP079941
Coordinates   2072967..2073512 (+) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain C311     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2067967..2078512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS10310 (KZH42_10305) - 2068036..2070432 (-) 2397 WP_002219786.1 penicillin-binding protein 1A -
  KZH42_RS10315 (KZH42_10310) pilM 2070584..2071699 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  KZH42_RS10320 (KZH42_10315) pilN 2071702..2072301 (+) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  KZH42_RS10325 (KZH42_10320) - 2072302..2072949 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  KZH42_RS10330 (KZH42_10325) pilP 2072967..2073512 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  KZH42_RS10335 (KZH42_10330) pilQ 2073531..2075840 (+) 2310 WP_002225652.1 type IV pilus secretin PilQ Machinery gene
  KZH42_RS10340 (KZH42_10335) - 2076742..2077254 (+) 513 WP_002222978.1 shikimate kinase -
  KZH42_RS10345 (KZH42_10340) aroB 2077334..2078413 (+) 1080 WP_002221481.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=515889 KZH42_RS10330 WP_002214522.1 2072967..2073512(+) (pilP) [Neisseria meningitidis strain C311]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=515889 KZH42_RS10330 WP_002214522.1 2072967..2073512(+) (pilP) [Neisseria meningitidis strain C311]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTAATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1