Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6H71_RS10470 Genome accession   NZ_CP065980
Coordinates   2179984..2180850 (-) Length   288 a.a.
NCBI ID   WP_103209421.1    Uniprot ID   -
Organism   Staphylococcus felis strain FDAARGOS_1014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2174984..2185850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H71_RS10455 (I6H71_10455) - 2175474..2176364 (-) 891 WP_167388996.1 tyrosine recombinase XerC -
  I6H71_RS10460 (I6H71_10460) trmFO 2176483..2177790 (-) 1308 WP_103209418.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6H71_RS10465 (I6H71_10465) topA 2177810..2179879 (-) 2070 WP_103209420.1 type I DNA topoisomerase -
  I6H71_RS10470 (I6H71_10470) dprA 2179984..2180850 (-) 867 WP_103209421.1 DNA-processing protein DprA Machinery gene
  I6H71_RS10475 (I6H71_10475) sucD 2181038..2181943 (-) 906 WP_103209423.1 succinate--CoA ligase subunit alpha -
  I6H71_RS10480 (I6H71_10480) sucC 2181965..2183131 (-) 1167 WP_103209425.1 ADP-forming succinate--CoA ligase subunit beta -
  I6H71_RS10485 (I6H71_10485) - 2183315..2183644 (+) 330 WP_103209426.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  I6H71_RS10490 (I6H71_10490) - 2183770..2184039 (-) 270 WP_103209428.1 hypothetical protein -
  I6H71_RS10495 (I6H71_10495) - 2184155..2184937 (-) 783 WP_103209429.1 ribonuclease HII -
  I6H71_RS10500 (I6H71_10500) ylqF 2184930..2185805 (-) 876 WP_103209431.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32962.26 Da        Isoelectric Point: 9.8024

>NTDB_id=515882 I6H71_RS10470 WP_103209421.1 2179984..2180850(-) (dprA) [Staphylococcus felis strain FDAARGOS_1014]
MQKIFLLLLYAGFSTHQIQKIERLMPNMLNPPYAFSKFKKIRSLFNHNPAIQKKFQLLEQLNYDVILDDLRQKNIKVVDM
TSTYYPHLLKEIFDPPYVLFCKGNLQLLNHMNQTLSIVGARMHTAYTTQALEYLFPYFATKKLIIVSGLASGTDALAHQY
ALSHHLSTIGVLAFGHDHHYPQNTKHLRKQIEKMSLTVSEYPPHTPPSRYRFPERNRIISGVSKGVFVTEAKEKSGALIT
IDQALEQNRNVYVLPGTMFDTHTKGNLMRAKEGAEIVLGAADILKDYE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=515882 I6H71_RS10470 WP_103209421.1 2179984..2180850(-) (dprA) [Staphylococcus felis strain FDAARGOS_1014]
ATGCAAAAAATATTTCTATTATTGCTTTATGCTGGGTTCTCAACACATCAGATACAGAAAATCGAAAGGCTTATGCCAAA
TATGCTTAATCCTCCTTATGCATTTAGCAAGTTCAAAAAAATACGCTCTCTTTTTAATCATAATCCAGCTATACAGAAAA
AATTTCAACTGTTAGAACAACTAAATTATGATGTCATTCTAGACGACTTACGTCAAAAAAACATTAAAGTAGTTGACATG
ACGAGCACTTATTATCCTCATTTGTTGAAAGAAATATTTGATCCCCCCTATGTTCTTTTTTGTAAAGGAAATCTCCAATT
ATTAAACCATATGAATCAAACGTTGAGTATAGTAGGTGCTCGAATGCACACAGCCTACACAACACAAGCGTTAGAATATC
TATTTCCTTATTTTGCAACAAAAAAATTAATTATAGTGTCTGGTTTGGCCAGTGGAACAGATGCATTAGCTCATCAATAC
GCTTTATCACATCATCTATCGACAATTGGTGTTTTAGCGTTTGGACATGACCATCATTACCCACAAAATACGAAACATTT
ACGAAAGCAAATTGAAAAAATGAGTTTAACCGTGAGTGAATATCCACCACATACACCACCGTCACGTTACAGGTTTCCAG
AACGTAACCGTATTATTAGTGGTGTGTCGAAGGGTGTATTTGTTACCGAGGCGAAAGAAAAAAGTGGGGCGCTTATAACG
ATTGATCAAGCATTAGAGCAAAATCGTAACGTATATGTTTTGCCAGGAACGATGTTTGACACACATACAAAAGGGAATTT
AATGCGAGCAAAAGAAGGTGCAGAAATAGTATTAGGTGCGGCTGATATTTTAAAAGATTACGAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.724

100

0.521
  dprA Staphylococcus aureus MW2

51.724

100

0.521