Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LY180_RS13850 Genome accession   NC_022364
Coordinates   2811117..2811854 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli LY180     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806117..2816854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY180_RS13835 (LY180_13300) clpC 2806571..2809144 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LY180_RS13840 (LY180_13305) yfiH 2809274..2810005 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  LY180_RS13845 (LY180_13310) rluD 2810002..2810982 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LY180_RS13850 (LY180_13315) comL 2811117..2811854 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LY180_RS13860 (LY180_13320) raiA 2812125..2812466 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LY180_RS26370 pheL 2812570..2812617 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LY180_RS13865 (LY180_13325) pheA 2812716..2813876 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  LY180_RS13870 (LY180_13330) tyrA 2813919..2815040 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LY180_RS13875 (LY180_13335) aroF 2815051..2816121 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LY180_RS13880 (LY180_13340) yfiL 2816331..2816696 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=51588 LY180_RS13850 WP_000197686.1 2811117..2811854(+) (comL) [Escherichia coli LY180]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=51588 LY180_RS13850 WP_000197686.1 2811117..2811854(+) (comL) [Escherichia coli LY180]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376