Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6H71_RS03950 Genome accession   NZ_CP065980
Coordinates   871094..871597 (+) Length   167 a.a.
NCBI ID   WP_103207848.1    Uniprot ID   A0A2K3ZHH0
Organism   Staphylococcus felis strain FDAARGOS_1014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 866094..876597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H71_RS03930 (I6H71_03930) ltrA 866544..867830 (+) 1287 WP_198456237.1 group II intron reverse transcriptase/maturase -
  I6H71_RS03935 (I6H71_03935) - 867913..868551 (-) 639 WP_103207854.1 NAD(P)-dependent oxidoreductase -
  I6H71_RS03940 (I6H71_03940) - 868761..870293 (-) 1533 WP_103207852.1 B domain-containing protein -
  I6H71_RS03945 (I6H71_03945) rpsF 870774..871070 (+) 297 WP_103207850.1 30S ribosomal protein S6 -
  I6H71_RS03950 (I6H71_03950) ssbA 871094..871597 (+) 504 WP_103207848.1 single-stranded DNA-binding protein Machinery gene
  I6H71_RS03955 (I6H71_03955) rpsR 871642..871884 (+) 243 WP_014614919.1 30S ribosomal protein S18 -
  I6H71_RS03960 (I6H71_03960) gmpC 872368..873210 (-) 843 WP_103207846.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  I6H71_RS03965 (I6H71_03965) - 873226..873885 (-) 660 WP_103207844.1 methionine ABC transporter permease -
  I6H71_RS03970 (I6H71_03970) - 873887..874903 (-) 1017 WP_103207842.1 methionine ABC transporter ATP-binding protein -
  I6H71_RS03975 (I6H71_03975) - 875176..875553 (-) 378 WP_103207841.1 iron chaperone -
  I6H71_RS03980 (I6H71_03980) - 875689..875991 (+) 303 WP_103207839.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18660.30 Da        Isoelectric Point: 4.9305

>NTDB_id=515858 I6H71_RS03950 WP_103207848.1 871094..871597(+) (ssbA) [Staphylococcus felis strain FDAARGOS_1014]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHANNPGNDFQSYEQSFGGQQQGQNSSYQNNNQSSHNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=515858 I6H71_RS03950 WP_103207848.1 871094..871597(+) (ssbA) [Staphylococcus felis strain FDAARGOS_1014]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTTGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCCCAAGGGGAACGTGAAGCGGACTTCATCAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAACGTAAGTAACTTCTTATTTAAAGGAAGTCTTGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTCACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAGCGTCATGCCAATAACCCAGGAAATGATTTCCAAAGTTATGAACAAAGTTTCGGTGGACAACAACAAGGCC
AAAATTCGTCATATCAAAACAACAATCAATCATCCCATAATGATAACCCATTTGCCAATGCGAATGGACCAATTGATATT
AGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3ZHH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.677
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.868

0.377