Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6I15_RS19960 Genome accession   NZ_CP065970
Coordinates   4032102..4032731 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1058     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4027102..4037731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I15_RS19945 (I6I15_19940) helD 4027344..4029398 (-) 2055 WP_000420537.1 DNA helicase IV -
  I6I15_RS19950 (I6I15_19945) yccF 4029521..4029967 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I6I15_RS19955 (I6I15_19950) yccS 4029977..4032139 (+) 2163 WP_000875044.1 YccS family putative transporter -
  I6I15_RS19960 (I6I15_19955) sxy/tfoX 4032102..4032731 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6I15_RS19965 (I6I15_19960) sulA 4032950..4033459 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6I15_RS19970 (I6I15_19965) ompA 4033816..4034868 (+) 1053 WP_001361736.1 porin OmpA -
  I6I15_RS19975 (I6I15_19970) matP 4034944..4035396 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6I15_RS19980 (I6I15_19975) ycbZ 4035582..4037342 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=515850 I6I15_RS19960 WP_000839153.1 4032102..4032731(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1058]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=515850 I6I15_RS19960 WP_000839153.1 4032102..4032731(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1058]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1