Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   KZH43_RS02290 Genome accession   NZ_CP079923
Coordinates   463394..464443 (+) Length   349 a.a.
NCBI ID   WP_000653770.1    Uniprot ID   Q8DQW6
Organism   Streptococcus pneumoniae strain Rx1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 458394..469443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH43_RS02265 (KZH43_02270) - 459680..460036 (+) 357 WP_000114427.1 hypothetical protein -
  KZH43_RS02270 (KZH43_02275) dnaJ 460438..461556 (+) 1119 WP_001066302.1 molecular chaperone DnaJ -
  KZH43_RS02275 (KZH43_02280) - 461891..462178 (-) 288 WP_000777760.1 hypothetical protein -
  KZH43_RS02280 (KZH43_02285) - 462188..462598 (-) 411 WP_001278301.1 HIT family protein -
  KZH43_RS02285 (KZH43_02290) pptA 462666..463397 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  KZH43_RS02290 (KZH43_02295) pptB 463394..464443 (+) 1050 WP_000653770.1 ABC transporter permease Regulator
  KZH43_RS02295 (KZH43_02300) - 464611..464940 (-) 330 WP_000132569.1 hypothetical protein -
  KZH43_RS02300 (KZH43_02305) - 465216..465554 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  KZH43_RS02305 (KZH43_02310) comE/blpR 465559..466296 (+) 738 WP_001219139.1 response regulator transcription factor Regulator
  KZH43_RS02310 (KZH43_02315) - 466310..467650 (+) 1341 WP_001017622.1 sensor histidine kinase -
  KZH43_RS02315 (KZH43_02320) blpC 467692..467847 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  KZH43_RS02320 (KZH43_02325) - 467904..469265 (-) 1362 Protein_464 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=515692 KZH43_RS02290 WP_000653770.1 463394..464443(+) (pptB) [Streptococcus pneumoniae strain Rx1]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFAISLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=515692 KZH43_RS02290 WP_000653770.1 463394..464443(+) (pptB) [Streptococcus pneumoniae strain Rx1]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTATCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DQW6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467