Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JBL47_RS16865 Genome accession   NZ_CP065946
Coordinates   3699429..3700502 (-) Length   357 a.a.
NCBI ID   WP_198481748.1    Uniprot ID   -
Organism   Pectobacterium parmentieri strain WC19161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3694429..3705502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL47_RS16850 (JBL47_16850) csrA 3695621..3695806 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  JBL47_RS16855 (JBL47_16855) alaS 3696130..3698757 (-) 2628 WP_014698885.1 alanine--tRNA ligase -
  JBL47_RS16860 (JBL47_16860) recX 3698895..3699383 (-) 489 WP_012822823.1 recombination regulator RecX -
  JBL47_RS16865 (JBL47_16865) recA 3699429..3700502 (-) 1074 WP_198481748.1 recombinase RecA Machinery gene
  JBL47_RS16870 (JBL47_16870) pncC 3700610..3701104 (-) 495 WP_198481749.1 nicotinamide-nucleotide amidase -
  JBL47_RS16875 (JBL47_16875) - 3701351..3701686 (-) 336 WP_005972147.1 hypothetical protein -
  JBL47_RS16880 (JBL47_16880) - 3702169..3702657 (+) 489 WP_012822820.1 SRPBCC family protein -
  JBL47_RS16885 (JBL47_16885) - 3702741..3703415 (+) 675 WP_005972142.1 MarC family NAAT transporter -
  JBL47_RS16890 (JBL47_16890) - 3703577..3705175 (+) 1599 WP_012822819.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38176.66 Da        Isoelectric Point: 5.1794

>NTDB_id=515591 JBL47_RS16865 WP_198481748.1 3699429..3700502(-) (recA) [Pectobacterium parmentieri strain WC19161]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENSAIAAEL
DKKLREMLLHKGNELTPAAVGNSHGEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=515591 JBL47_RS16865 WP_198481748.1 3699429..3700502(-) (recA) [Pectobacterium parmentieri strain WC19161]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCGATGGATGTTGAAACCATTTCTACGGGCTCTTTGTCCCTTGATATTGCTCTGGGGG
CCGGCGGTTTACCTATGGGGCGCATCGTTGAGATTTATGGCCCAGAATCTTCTGGTAAAACCACGCTGACCTTACAGGTG
ATTGCCGCTGCTCAACGCGAAGGAAAAACCTGTGCGTTCATCGATGCTGAACATGCGTTGGACCCGATTTATGCGAAAAA
ACTTGGCGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAAGCACTGGAGATCTGTGATGCACTCA
CGCGCTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTTGCAGCCTTGACACCAAAAGCTGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCAGGTAACCTGAAACAAGCCAA
TACGCTGCTAATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGTGGTA
ACGCACTGAAATTTTATGCCTCTGTTCGTCTGGATATTCGTCGTACTGGCGCTATCAAGGACGGTGAAGAAGTTGTCGGT
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTTTGTATGGTGA
AGGTATCAATATCCACGGTGAGTTAGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCGGGTGCATGGTATAGCT
ATAACGGCGACAAAATCGGCCAGGGTAAAGCAAACGCCTGCAATTTCCTGAAAGAGAATTCAGCGATTGCTGCTGAACTG
GATAAAAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTAACGCCTGCCGCAGTAGGTAATAGCCATGGCGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.254

99.44

0.818
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.254

99.44

0.818
  recA Pseudomonas stutzeri DSM 10701

73.746

94.958

0.7
  recA Glaesserella parasuis strain SC1401

68.661

98.319

0.675
  recA Acinetobacter baylyi ADP1

71.131

94.118

0.669
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.317

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae R6

59.718

99.44

0.594
  recA Streptococcus pneumoniae Rx1

59.718

99.44

0.594
  recA Streptococcus pneumoniae D39

59.718

99.44

0.594
  recA Streptococcus pneumoniae TIGR4

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Streptococcus mutans UA159

62.462

91.036

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

61.846

91.036

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.476

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

91.317

0.532