Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   JAV55_RS18605 Genome accession   NZ_CP065943
Coordinates   3591093..3592250 (-) Length   385 a.a.
NCBI ID   WP_003185733.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3586093..3597250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS18575 (JAV55_18575) - 3586337..3586756 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  JAV55_RS18580 (JAV55_18580) comFC 3586815..3587549 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  JAV55_RS18585 (JAV55_18585) - 3587506..3587790 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  JAV55_RS18590 (JAV55_18590) comFA 3587845..3589239 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  JAV55_RS18595 (JAV55_18595) - 3589360..3590202 (-) 843 WP_003185726.1 DegV family protein -
  JAV55_RS18600 (JAV55_18600) degU 3590322..3591011 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  JAV55_RS18605 (JAV55_18605) degS 3591093..3592250 (-) 1158 WP_003185733.1 histidine kinase Regulator
  JAV55_RS18610 (JAV55_18610) - 3592464..3593102 (+) 639 WP_003185736.1 YigZ family protein -
  JAV55_RS18615 (JAV55_18615) - 3593117..3594193 (+) 1077 WP_003185737.1 LCP family protein -
  JAV55_RS18620 (JAV55_18620) - 3594278..3594652 (-) 375 WP_025806150.1 hypothetical protein -
  JAV55_RS18625 (JAV55_18625) - 3594772..3595836 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -
  JAV55_RS18630 (JAV55_18630) - 3595967..3597148 (-) 1182 WP_003185740.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44636.36 Da        Isoelectric Point: 6.7863

>NTDB_id=515566 JAV55_RS18605 WP_003185733.1 3591093..3592250(-) (degS) [Bacillus licheniformis strain H2]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEERRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=515566 JAV55_RS18605 WP_003185733.1 3591093..3592250(-) (degS) [Bacillus licheniformis strain H2]
GTGAGCGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAAGTCTTTCAAATCGGAGAGCAGTCCCGCCAGCAATACGAAGGCTTGGTAGAAGAGCTGAAACAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGGAACCGCTTGTCAGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACAATGAT
CCAGCAGCGGGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGTCAGATTACCGTCGTCTTAAACTACTTAAATCAGGATCTGCGCCAGGTCGGCGTTCTCCTT
GAAGATGCGCAGGCCAAGCAGGATTTCGGACTGCGGATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGTCCTGCGCAAATGCTGGCCAACGTTATGATGAGATCTGAACTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAAAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGGCCGATGGCTTTAGACGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATTCATTTCCAATGCATCGGAGAATCCGAAGAAAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TATTCCGGCTTGCACAGGAAGCGGTGACAAACGCCTTAAAACACTCCGAATCAACTGAAATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGCTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTAAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGCTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATATTGATTAAAGTTCCACTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894