Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JAV55_RS18580 Genome accession   NZ_CP065943
Coordinates   3586815..3587549 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain H2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3581815..3592549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS18545 (JAV55_18545) fliW 3581966..3582397 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  JAV55_RS18550 (JAV55_18550) - 3582419..3582985 (-) 567 WP_003185702.1 DUF6470 family protein -
  JAV55_RS18555 (JAV55_18555) flgL 3583035..3583946 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  JAV55_RS18560 (JAV55_18560) flgK 3583957..3585480 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  JAV55_RS18565 (JAV55_18565) - 3585496..3585972 (-) 477 WP_003185711.1 flagellar protein FlgN -
  JAV55_RS18570 (JAV55_18570) flgM 3585991..3586257 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  JAV55_RS18575 (JAV55_18575) - 3586337..3586756 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  JAV55_RS18580 (JAV55_18580) comFC 3586815..3587549 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  JAV55_RS18585 (JAV55_18585) - 3587506..3587790 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  JAV55_RS18590 (JAV55_18590) comFA 3587845..3589239 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  JAV55_RS18595 (JAV55_18595) - 3589360..3590202 (-) 843 WP_003185726.1 DegV family protein -
  JAV55_RS18600 (JAV55_18600) degU 3590322..3591011 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  JAV55_RS18605 (JAV55_18605) degS 3591093..3592250 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=515563 JAV55_RS18580 WP_011198352.1 3586815..3587549(-) (comFC) [Bacillus licheniformis strain H2]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=515563 JAV55_RS18580 WP_011198352.1 3586815..3587549(-) (comFC) [Bacillus licheniformis strain H2]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508