Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JAV55_RS16455 Genome accession   NZ_CP065943
Coordinates   3186915..3187553 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain H2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181915..3192553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS16420 (JAV55_16420) - 3183105..3183536 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  JAV55_RS16425 (JAV55_16425) - 3183536..3183877 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  JAV55_RS16430 (JAV55_16430) - 3183870..3185345 (+) 1476 WP_031314695.1 Na+/H+ antiporter subunit D -
  JAV55_RS16435 (JAV55_16435) - 3185351..3185827 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  JAV55_RS16440 (JAV55_16440) - 3185827..3186111 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  JAV55_RS16445 (JAV55_16445) mnhG 3186095..3186469 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  JAV55_RS16450 (JAV55_16450) - 3186509..3186898 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  JAV55_RS16455 (JAV55_16455) comA 3186915..3187553 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  JAV55_RS16460 (JAV55_16460) comP 3187640..3189946 (-) 2307 WP_003184851.1 ATP-binding protein Regulator
  JAV55_RS16465 (JAV55_16465) comX 3189969..3190133 (-) 165 WP_003184853.1 competence pheromone ComX -
  JAV55_RS16470 (JAV55_16470) - 3190142..3191023 (-) 882 WP_021837675.1 polyprenyl synthetase family protein -
  JAV55_RS16475 (JAV55_16475) degQ 3191212..3191352 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  JAV55_RS16480 (JAV55_16480) - 3191838..3192185 (+) 348 WP_231105863.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=515556 JAV55_RS16455 WP_003184849.1 3186915..3187553(-) (comA) [Bacillus licheniformis strain H2]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=515556 JAV55_RS16455 WP_003184849.1 3186915..3187553(-) (comA) [Bacillus licheniformis strain H2]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778