Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JAV55_RS01990 Genome accession   NZ_CP065943
Coordinates   368735..369181 (-) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363735..374181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS01965 (JAV55_01965) - 364342..365217 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  JAV55_RS01970 (JAV55_01970) - 365401..365952 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  JAV55_RS01975 (JAV55_01975) - 366049..366774 (+) 726 WP_198479875.1 AAA family ATPase -
  JAV55_RS01980 (JAV55_01980) - 366844..368280 (+) 1437 WP_017473999.1 glycoside hydrolase family 1 protein -
  JAV55_RS01985 (JAV55_01985) nin/comJ 368319..368717 (-) 399 WP_017473998.1 competence protein ComJ Regulator
  JAV55_RS01990 (JAV55_01990) nucA/comI 368735..369181 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JAV55_RS01995 (JAV55_01995) - 369480..369650 (+) 171 WP_011197533.1 hypothetical protein -
  JAV55_RS02000 (JAV55_02000) - 369656..370459 (+) 804 WP_017473997.1 protein kinase -
  JAV55_RS02005 (JAV55_02005) - 370479..372088 (-) 1610 Protein_361 methyl-accepting chemotaxis protein -
  JAV55_RS02010 (JAV55_02010) - 372281..373021 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=515509 JAV55_RS01990 WP_009330244.1 368735..369181(-) (nucA/comI) [Bacillus licheniformis strain H2]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=515509 JAV55_RS01990 WP_009330244.1 368735..369181(-) (nucA/comI) [Bacillus licheniformis strain H2]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642