Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   JAV55_RS01985 Genome accession   NZ_CP065943
Coordinates   368319..368717 (-) Length   132 a.a.
NCBI ID   WP_017473998.1    Uniprot ID   A0AB37GU74
Organism   Bacillus licheniformis strain H2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 363319..373717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS01960 (JAV55_01960) - 363647..364330 (-) 684 WP_003178799.1 amino acid ABC transporter permease -
  JAV55_RS01965 (JAV55_01965) - 364342..365217 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  JAV55_RS01970 (JAV55_01970) - 365401..365952 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  JAV55_RS01975 (JAV55_01975) - 366049..366774 (+) 726 WP_198479875.1 AAA family ATPase -
  JAV55_RS01980 (JAV55_01980) - 366844..368280 (+) 1437 WP_017473999.1 glycoside hydrolase family 1 protein -
  JAV55_RS01985 (JAV55_01985) nin/comJ 368319..368717 (-) 399 WP_017473998.1 competence protein ComJ Regulator
  JAV55_RS01990 (JAV55_01990) nucA/comI 368735..369181 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JAV55_RS01995 (JAV55_01995) - 369480..369650 (+) 171 WP_011197533.1 hypothetical protein -
  JAV55_RS02000 (JAV55_02000) - 369656..370459 (+) 804 WP_017473997.1 protein kinase -
  JAV55_RS02005 (JAV55_02005) - 370479..372088 (-) 1610 Protein_361 methyl-accepting chemotaxis protein -
  JAV55_RS02010 (JAV55_02010) - 372281..373021 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15034.13 Da        Isoelectric Point: 5.6435

>NTDB_id=515508 JAV55_RS01985 WP_017473998.1 368319..368717(-) (nin/comJ) [Bacillus licheniformis strain H2]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNVQKQVLSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=515508 JAV55_RS01985 WP_017473998.1 368319..368717(-) (nin/comJ) [Bacillus licheniformis strain H2]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGTCCAAAAACAGGTGCTCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTCGAAATTGCAAGCGTTCTATCCAAGAAATTGACATGCGATATCCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485