Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KYX59_RS11200 Genome accession   NZ_CP079780
Coordinates   1853518..1854255 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BL12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848518..1859255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX59_RS11185 (KYX59_11115) clpC 1848972..1851545 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KYX59_RS11190 (KYX59_11120) yfiH 1851675..1852406 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KYX59_RS11195 (KYX59_11125) rluD 1852403..1853383 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KYX59_RS11200 (KYX59_11130) comL 1853518..1854255 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KYX59_RS11205 (KYX59_11135) raiA 1854526..1854867 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KYX59_RS11210 (KYX59_11140) pheL 1854971..1855018 (+) 48 WP_010723158.1 phe operon leader peptide -
  KYX59_RS11215 (KYX59_11145) pheA 1855117..1856277 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  KYX59_RS11220 (KYX59_11150) tyrA 1856320..1857441 (-) 1122 WP_115441092.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KYX59_RS11225 (KYX59_11155) aroF 1857452..1858522 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KYX59_RS11230 (KYX59_11160) yfiL 1858732..1859097 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=515453 KYX59_RS11200 WP_000197686.1 1853518..1854255(+) (comL) [Escherichia coli strain BL12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=515453 KYX59_RS11200 WP_000197686.1 1853518..1854255(+) (comL) [Escherichia coli strain BL12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376