Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JC284_RS06000 | Genome accession | NZ_CP065919 |
| Coordinates | 1280395..1281369 (+) | Length | 324 a.a. |
| NCBI ID | WP_014613820.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain SP_11306-4A | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1275395..1286369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC284_RS05965 (JC284_05965) | rpmG | 1275781..1275945 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| JC284_RS05970 (JC284_05970) | - | 1276095..1276634 (+) | 540 | WP_198458444.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| JC284_RS05975 (JC284_05975) | - | 1276653..1278092 (+) | 1440 | WP_198458445.1 | rhomboid family intramembrane serine protease | - |
| JC284_RS05980 (JC284_05980) | - | 1278094..1278297 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| JC284_RS05985 (JC284_05985) | - | 1278294..1279280 (+) | 987 | WP_014613817.1 | ROK family glucokinase | - |
| JC284_RS05990 (JC284_05990) | - | 1279281..1279592 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| JC284_RS05995 (JC284_05995) | - | 1279605..1280234 (+) | 630 | WP_037542865.1 | MBL fold metallo-hydrolase | - |
| JC284_RS06000 (JC284_06000) | comGA | 1280395..1281369 (+) | 975 | WP_014613820.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JC284_RS06005 (JC284_06005) | comGB | 1281338..1282405 (+) | 1068 | WP_037542939.1 | competence type IV pilus assembly protein ComGB | - |
| JC284_RS06010 (JC284_06010) | comGC | 1282418..1282741 (+) | 324 | WP_015729165.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JC284_RS06015 (JC284_06015) | comGD | 1282719..1283159 (+) | 441 | WP_014613823.1 | competence type IV pilus minor pilin ComGD | - |
| JC284_RS06020 (JC284_06020) | - | 1283264..1283464 (+) | 201 | WP_020219623.1 | hypothetical protein | - |
| JC284_RS06025 (JC284_06025) | - | 1283370..1283855 (+) | 486 | WP_080552896.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| JC284_RS06030 (JC284_06030) | - | 1284019..1284546 (+) | 528 | WP_014613826.1 | shikimate kinase | - |
| JC284_RS06035 (JC284_06035) | gcvT | 1284704..1285795 (+) | 1092 | WP_015729161.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36846.58 Da Isoelectric Point: 7.5584
>NTDB_id=515162 JC284_RS06000 WP_014613820.1 1280395..1281369(+) (comGA) [Staphylococcus pseudintermedius strain SP_11306-4A]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=515162 JC284_RS06000 WP_014613820.1 1280395..1281369(+) (comGA) [Staphylococcus pseudintermedius strain SP_11306-4A]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.514 |
99.691 |
0.583 |
| comGA | Staphylococcus aureus N315 |
58.514 |
99.691 |
0.583 |