Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I1A60_RS08100 Genome accession   NZ_CP065857
Coordinates   1675788..1676474 (-) Length   228 a.a.
NCBI ID   WP_072468124.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1153-MRSA     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670788..1681474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A60_RS08080 (I1A60_08080) rpsT 1671702..1671953 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  I1A60_RS08085 (I1A60_08085) holA 1671998..1672972 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  I1A60_RS08090 (I1A60_08090) comEC 1673029..1675230 (-) 2202 WP_198051128.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I1A60_RS08095 (I1A60_08095) - 1675235..1675696 (-) 462 WP_000439693.1 ComE operon protein 2 -
  I1A60_RS08100 (I1A60_08100) comEA 1675788..1676474 (-) 687 WP_072468124.1 ComEA family DNA-binding protein Machinery gene
  I1A60_RS08105 (I1A60_08105) - 1676514..1677230 (-) 717 WP_072468123.1 class I SAM-dependent DNA methyltransferase -
  I1A60_RS08110 (I1A60_08110) rsfS 1677233..1677586 (-) 354 WP_001088022.1 ribosome silencing factor -
  I1A60_RS08115 (I1A60_08115) yqeK 1677587..1678171 (-) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I1A60_RS08120 (I1A60_08120) nadD 1678161..1678730 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  I1A60_RS08125 (I1A60_08125) yhbY 1678733..1679023 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  I1A60_RS08130 (I1A60_08130) aroE 1679027..1679833 (-) 807 WP_072468122.1 shikimate dehydrogenase -
  I1A60_RS08135 (I1A60_08135) yqeH 1679847..1680947 (-) 1101 WP_044289817.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25877.52 Da        Isoelectric Point: 9.5273

>NTDB_id=514998 I1A60_RS08100 WP_072468124.1 1675788..1676474(-) (comEA) [Staphylococcus aureus strain CC1153-MRSA]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=514998 I1A60_RS08100 WP_072468124.1 1675788..1676474(-) (comEA) [Staphylococcus aureus strain CC1153-MRSA]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

98.678

99.561

0.982
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974