Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   SSUST1_RS10150 Genome accession   NC_017950
Coordinates   2033355..2034119 (+) Length   254 a.a.
NCBI ID   WP_014736607.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2028355..2039119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS10135 (SSUST1_2079) - 2030737..2031420 (-) 684 WP_012775416.1 YoaK family protein -
  SSUST1_RS10140 (SSUST1_2080) rlmH 2031445..2031924 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SSUST1_RS10145 (SSUST1_2081) htrA 2032098..2033294 (+) 1197 WP_014736606.1 S1C family serine protease Regulator
  SSUST1_RS10150 (SSUST1_2082) spo0J 2033355..2034119 (+) 765 WP_014736607.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 254 a.a.        Molecular weight: 28956.22 Da        Isoelectric Point: 9.4760

>NTDB_id=51494 SSUST1_RS10150 WP_014736607.1 2033355..2034119(+) (spo0J) [Streptococcus suis ST1]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNSIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=51494 SSUST1_RS10150 WP_014736607.1 2033355..2034119(+) (spo0J) [Streptococcus suis ST1]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATTCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.762

99.213

0.543


Multiple sequence alignment