Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I8N79_RS16825 Genome accession   NZ_CP065841
Coordinates   3384187..3384783 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KqPF9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3379187..3389783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N79_RS16810 (I8N79_16810) helD 3379398..3381452 (-) 2055 WP_004201438.1 DNA helicase IV -
  I8N79_RS16815 (I8N79_16815) - 3381577..3382023 (+) 447 WP_004201437.1 YccF domain-containing protein -
  I8N79_RS16820 (I8N79_16820) yccS 3382041..3384176 (+) 2136 WP_004201435.1 YccS family putative transporter -
  I8N79_RS16825 (I8N79_16825) sxy/tfoX 3384187..3384783 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  I8N79_RS16830 (I8N79_16830) - 3384801..3385106 (-) 306 WP_153351982.1 hypothetical protein -
  I8N79_RS16835 (I8N79_16835) sulA 3385132..3385641 (+) 510 WP_080841183.1 SOS-induced cell division inhibitor SulA -
  I8N79_RS16840 (I8N79_16840) ompA 3385994..3387064 (+) 1071 WP_002898408.1 porin OmpA -
  I8N79_RS16845 (I8N79_16845) matP 3387316..3387768 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I8N79_RS16850 (I8N79_16850) - 3387954..3389711 (+) 1758 WP_124989154.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=514903 I8N79_RS16825 WP_004201433.1 3384187..3384783(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KqPF9]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=514903 I8N79_RS16825 WP_004201433.1 3384187..3384783(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KqPF9]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAAGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCGCTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5