Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KYX13_RS05640 Genome accession   NZ_CP079736
Coordinates   1159723..1160460 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GB2005-delet-a-f     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154723..1165460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX13_RS05610 (KYX13_05610) yfiL 1154881..1155246 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KYX13_RS05615 (KYX13_05615) aroF 1155456..1156526 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KYX13_RS05620 (KYX13_05620) tyrA 1156537..1157658 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KYX13_RS05625 (KYX13_05625) pheA 1157701..1158861 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KYX13_RS05630 (KYX13_05630) pheL 1158960..1159007 (-) 48 WP_010723158.1 phe operon leader peptide -
  KYX13_RS05635 (KYX13_05635) raiA 1159111..1159452 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KYX13_RS05640 (KYX13_05640) comL 1159723..1160460 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KYX13_RS05645 (KYX13_05645) rluD 1160595..1161575 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KYX13_RS05650 (KYX13_05650) yfiH 1161572..1162303 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KYX13_RS05655 (KYX13_05655) clpB 1162433..1165013 (+) 2581 Protein_1111 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=514786 KYX13_RS05640 WP_000197686.1 1159723..1160460(-) (comL) [Escherichia coli strain GB2005-delet-a-f]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=514786 KYX13_RS05640 WP_000197686.1 1159723..1160460(-) (comL) [Escherichia coli strain GB2005-delet-a-f]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376