Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I8T81_RS17555 Genome accession   NZ_CP065820
Coordinates   3798691..3800259 (+) Length   522 a.a.
NCBI ID   WP_198071744.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3793691..3805259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS17535 (I8T81_17535) - 3794184..3795485 (+) 1302 WP_198071743.1 homoserine dehydrogenase -
  I8T81_RS17540 (I8T81_17540) thrC 3795540..3796679 (+) 1140 WP_019457006.1 threonine synthase -
  I8T81_RS17545 (I8T81_17545) pbpG 3796787..3797833 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I8T81_RS17550 (I8T81_17550) - 3798045..3798680 (+) 636 WP_019457005.1 response regulator -
  I8T81_RS17555 (I8T81_17555) pilS 3798691..3800259 (+) 1569 WP_198071744.1 PAS domain-containing sensor histidine kinase Regulator
  I8T81_RS17560 (I8T81_17560) pilR 3800285..3801706 (+) 1422 WP_151749463.1 sigma-54 dependent transcriptional regulator Regulator
  I8T81_RS17565 (I8T81_17565) - 3801710..3802894 (-) 1185 WP_198071745.1 S41 family peptidase -
  I8T81_RS17570 (I8T81_17570) gpmI 3802910..3804457 (-) 1548 WP_198071746.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59028.19 Da        Isoelectric Point: 6.2264

>NTDB_id=514762 I8T81_RS17555 WP_198071744.1 3798691..3800259(+) (pilS) [Acinetobacter seifertii strain S21]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQADNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIATQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYDIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPDVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=514762 I8T81_RS17555 WP_198071744.1 3798691..3800259(+) (pilS) [Acinetobacter seifertii strain S21]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAGCCGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTGCTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAACTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTGACTTTTTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTAATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGTATTGGTCAAATTGCGGTTCAACGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACGACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCTCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCTCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCAGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTGATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-271)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.72

100

0.927