Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I8T81_RS17560 Genome accession   NZ_CP065820
Coordinates   3800285..3801706 (+) Length   473 a.a.
NCBI ID   WP_151749463.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795285..3806706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS17540 (I8T81_17540) thrC 3795540..3796679 (+) 1140 WP_019457006.1 threonine synthase -
  I8T81_RS17545 (I8T81_17545) pbpG 3796787..3797833 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I8T81_RS17550 (I8T81_17550) - 3798045..3798680 (+) 636 WP_019457005.1 response regulator -
  I8T81_RS17555 (I8T81_17555) pilS 3798691..3800259 (+) 1569 WP_198071744.1 PAS domain-containing sensor histidine kinase Regulator
  I8T81_RS17560 (I8T81_17560) pilR 3800285..3801706 (+) 1422 WP_151749463.1 sigma-54 dependent transcriptional regulator Regulator
  I8T81_RS17565 (I8T81_17565) - 3801710..3802894 (-) 1185 WP_198071745.1 S41 family peptidase -
  I8T81_RS17570 (I8T81_17570) gpmI 3802910..3804457 (-) 1548 WP_198071746.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I8T81_RS17575 (I8T81_17575) lptG 3804583..3805653 (-) 1071 WP_198071747.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53287.49 Da        Isoelectric Point: 6.5064

>NTDB_id=514763 I8T81_RS17560 WP_151749463.1 3800285..3801706(+) (pilR) [Acinetobacter seifertii strain S21]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVYQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=514763 I8T81_RS17560 WP_151749463.1 3800285..3801706(+) (pilR) [Acinetobacter seifertii strain S21]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTATGACGCATGCT
TAACCGATTTGAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTATCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACAG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACAGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGAGCAACTCAAGATAAACAGGGTCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGCATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTAATTAGTGCGAGCCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAAGATCTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCGCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAAAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCGCCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTATCTCAGACT
ATACAAAATAACGTTACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.235

100

0.932
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488