Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I8T81_RS10720 Genome accession   NZ_CP065820
Coordinates   2322918..2323298 (-) Length   126 a.a.
NCBI ID   WP_198071123.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2317918..2328298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS10690 (I8T81_10690) tadA 2318035..2318539 (-) 505 Protein_2096 tRNA adenosine(34) deaminase TadA -
  I8T81_RS10695 (I8T81_10695) - 2318547..2319671 (-) 1125 WP_198071118.1 enoyl-CoA hydratase/isomerase family protein -
  I8T81_RS10700 (I8T81_10700) ung 2319668..2320381 (-) 714 WP_004701973.1 uracil-DNA glycosylase -
  I8T81_RS10705 (I8T81_10705) - 2320432..2321028 (-) 597 WP_134261626.1 6-carboxytetrahydropterin synthase -
  I8T81_RS10710 (I8T81_10710) gspK 2321258..2322217 (-) 960 WP_198071120.1 type II secretion system minor pseudopilin GspK -
  I8T81_RS10715 (I8T81_10715) xcpW 2322217..2322918 (-) 702 WP_198071121.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I8T81_RS10720 (I8T81_10720) xcpV 2322918..2323298 (-) 381 WP_198071123.1 type II secretion system minor pseudopilin GspI Machinery gene
  I8T81_RS10725 (I8T81_10725) - 2323288..2323839 (-) 552 WP_004701984.1 type II secretion system protein -
  I8T81_RS10730 (I8T81_10730) - 2323849..2324457 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  I8T81_RS10735 (I8T81_10735) - 2324495..2325268 (-) 774 WP_198071125.1 TatD family hydrolase -
  I8T81_RS10740 (I8T81_10740) - 2325286..2325627 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  I8T81_RS10745 (I8T81_10745) - 2325640..2326620 (-) 981 WP_198071126.1 DNA polymerase III subunit delta' -
  I8T81_RS10750 (I8T81_10750) kdsB 2326632..2327393 (-) 762 WP_198071128.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13990.21 Da        Isoelectric Point: 9.4463

>NTDB_id=514747 I8T81_RS10720 WP_198071123.1 2322918..2323298(-) (xcpV) [Acinetobacter seifertii strain S21]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQV
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=514747 I8T81_RS10720 WP_198071123.1 2322918..2323298(-) (xcpV) [Acinetobacter seifertii strain S21]
ATGAAATCTAAAGGCTTTACCCTATTAGAAGTTATGGTAGCTCTTGCAATCTTTGCTGTAGCAGCTGTTGCTTTAACTAA
AGTAGCAATGCAGTACACACAGTCTACTTCTAATGCAATTTTACGAACCAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAAGGCACTCAAAGTAAGCAGGTAACTTCTCAAGGTGAGACATGGCAGGTT
GATAAATCAGCTGAATCAACTGTGAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGTAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944