NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	I8T81_RS10715	Genome accession	NZ_CP065820
Coordinates	2322217..2322918 (-)	Length	233 a.a.
NCBI ID	WP_198071121.1	Uniprot ID	-
Organism	Acinetobacter seifertii strain S21
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2317217..2327918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I8T81_RS10685 (I8T81_10685)	-	2317525..2317965 (-)	441	WP_107973453.1	SRPBCC family protein	-
I8T81_RS10690 (I8T81_10690)	tadA	2318035..2318539 (-)	505	Protein_2096	tRNA adenosine(34) deaminase TadA	-
I8T81_RS10695 (I8T81_10695)	-	2318547..2319671 (-)	1125	WP_198071118.1	enoyl-CoA hydratase/isomerase family protein	-
I8T81_RS10700 (I8T81_10700)	ung	2319668..2320381 (-)	714	WP_004701973.1	uracil-DNA glycosylase	-
I8T81_RS10705 (I8T81_10705)	-	2320432..2321028 (-)	597	WP_134261626.1	6-carboxytetrahydropterin synthase	-
I8T81_RS10710 (I8T81_10710)	gspK	2321258..2322217 (-)	960	WP_198071120.1	type II secretion system minor pseudopilin GspK	-
I8T81_RS10715 (I8T81_10715)	xcpW	2322217..2322918 (-)	702	WP_198071121.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I8T81_RS10720 (I8T81_10720)	xcpV	2322918..2323298 (-)	381	WP_198071123.1	type II secretion system minor pseudopilin GspI	Machinery gene
I8T81_RS10725 (I8T81_10725)	-	2323288..2323839 (-)	552	WP_004701984.1	type II secretion system protein	-
I8T81_RS10730 (I8T81_10730)	-	2323849..2324457 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
I8T81_RS10735 (I8T81_10735)	-	2324495..2325268 (-)	774	WP_198071125.1	TatD family hydrolase	-
I8T81_RS10740 (I8T81_10740)	-	2325286..2325627 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
I8T81_RS10745 (I8T81_10745)	-	2325640..2326620 (-)	981	WP_198071126.1	DNA polymerase III subunit delta'	-
I8T81_RS10750 (I8T81_10750)	kdsB	2326632..2327393 (-)	762	WP_198071128.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26498.47 Da Isoelectric Point: 9.7031

                                >NTDB_id=514746 I8T81_RS10715 WP_198071121.1 2322217..2322918(-) (xcpW) [Acinetobacter seifertii strain S21]

MIKNKYFCTRSKVSRLTARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDAEQKKLYRLKYTNLNTSNNEQPLS

STLLSQVDQYQVMVLTPQEVTKWPEVNIDPTKPNDLKKLPKGIKIQITVAGVSYEWIYSLNQSNLALSQQGGS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=514746 I8T81_RS10715 WP_198071121.1 2322217..2322918(-) (xcpW) [Acinetobacter seifertii strain S21]

ATGATAAAAAATAAGTACTTTTGCACCCGAAGCAAAGTTTCACGTCTTACGGCACGATCGAGCAGTGCTCGATTAGCTCG

CGCCTCAGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATTTTCGCGGTATTATCTTTATTGGGATGGAAAATAT

TCGATTATTTGCTTAAGGTCCGTGATCGTAACGCCGAACATGAAGTGCATTTATTTGAGTTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTCTGCAAATTATTCCTTTATCTGCAAATCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAACAGGGGTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCTGAACAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAATAACGAGCAACCTTTATCA

AGTACCTTACTAAGTCAAGTTGACCAATATCAGGTTATGGTTTTAACTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAA

TATTGATCCAACAAAACCTAACGATTTAAAAAAATTACCGAAAGGAATAAAAATCCAAATTACAGTAGCGGGAGTAAGTT

ATGAATGGATCTATAGCTTGAATCAAAGCAATTTAGCACTTTCCCAGCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	92.275	100	0.923

Detailed information NTG0514746