Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I8T81_RS02165 Genome accession   NZ_CP065820
Coordinates   454570..455205 (-) Length   211 a.a.
NCBI ID   WP_198072032.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449570..460205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS02130 (I8T81_02130) mlaE 449899..450675 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I8T81_RS02135 (I8T81_02135) - 450675..451358 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I8T81_RS02140 (I8T81_02140) - 451385..452026 (+) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  I8T81_RS02145 (I8T81_02145) - 452038..452325 (+) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  I8T81_RS02150 (I8T81_02150) - 452399..453412 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  I8T81_RS02155 (I8T81_02155) - 453570..454151 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  I8T81_RS02160 (I8T81_02160) - 454166..454564 (+) 399 WP_004705348.1 NUDIX domain-containing protein -
  I8T81_RS02165 (I8T81_02165) comF 454570..455205 (-) 636 WP_198072032.1 ComF family protein Machinery gene
  I8T81_RS02170 (I8T81_02170) recG 455198..457243 (-) 2046 WP_174743389.1 ATP-dependent DNA helicase RecG -
  I8T81_RS02175 (I8T81_02175) - 457264..458091 (+) 828 WP_198072033.1 NAD(P)H-binding protein -
  I8T81_RS02180 (I8T81_02180) - 458159..459145 (+) 987 WP_198072735.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24519.84 Da        Isoelectric Point: 10.0616

>NTDB_id=514738 I8T81_RS02165 WP_198072032.1 454570..455205(-) (comF) [Acinetobacter seifertii strain S21]
MFKLFNPQYLFQFLSPCLLCEIGTRGKHSLCKECWEQLPWLKQTVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLRIPVWQPVKRLNERSQKGLSRLERFENIEQQFVAI
PQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=514738 I8T81_RS02165 WP_198072032.1 454570..455205(-) (comF) [Acinetobacter seifertii strain S21]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTCTTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGACAGTTCAGCGTAATGATCTATCTGTCCTTG
TGGCCTGCCATTATGCCTATCCAATTAACCGTATAATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCCTA
CTTGCTGAGGTTTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAAGAGCGTTTAAC
GGAGCGAGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCA
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
CCTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTAGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

90.995

100

0.91
  comF Acinetobacter baumannii D1279779

90.047

100

0.9