Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I7831_RS06715 Genome accession   NZ_CP065797
Coordinates   1373224..1373643 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain GDY8P168P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1368224..1378643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7831_RS06685 (I7831_06685) atpD 1368340..1369752 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  I7831_RS06690 (I7831_06690) - 1369772..1370176 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  I7831_RS06695 (I7831_06695) - 1370438..1370671 (+) 234 WP_011302682.1 DUF1146 family protein -
  I7831_RS06700 (I7831_06700) murA 1370778..1372043 (+) 1266 WP_041080786.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I7831_RS06705 (I7831_06705) fabZ 1372098..1372535 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I7831_RS06710 (I7831_06710) - 1372593..1373033 (-) 441 WP_002482730.1 YwpF-like family protein -
  I7831_RS06715 (I7831_06715) ssb 1373224..1373643 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  I7831_RS06720 (I7831_06720) - 1374069..1374785 (+) 717 WP_041080784.1 transglycosylase family protein -
  I7831_RS06725 (I7831_06725) tenA 1375092..1375781 (+) 690 WP_002482733.1 thiaminase II -
  I7831_RS06730 (I7831_06730) thiD 1375774..1376595 (+) 822 WP_002482734.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I7831_RS06735 (I7831_06735) thiM 1376588..1377379 (+) 792 WP_002482735.1 hydroxyethylthiazole kinase -
  I7831_RS06740 (I7831_06740) thiE 1377379..1378017 (+) 639 WP_002482736.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=514665 I7831_RS06715 WP_011302684.1 1373224..1373643(+) (ssb) [Staphylococcus saprophyticus strain GDY8P168P]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=514665 I7831_RS06715 WP_011302684.1 1373224..1373643(+) (ssb) [Staphylococcus saprophyticus strain GDY8P168P]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597