Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KX728_RS08605 Genome accession   NZ_CP079724
Coordinates   1772771..1773364 (-) Length   197 a.a.
NCBI ID   WP_000273410.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1767771..1778364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS08575 (KX728_08570) - 1768402..1769346 (+) 945 WP_000815619.1 magnesium transporter CorA family protein -
  KX728_RS08580 (KX728_08575) - 1769358..1770035 (+) 678 WP_215804283.1 DUF1129 domain-containing protein -
  KX728_RS08585 (KX728_08580) - 1770051..1770398 (+) 348 WP_000331825.1 TfoX/Sxy family protein -
  KX728_RS08590 (KX728_08585) - 1770712..1771746 (+) 1035 WP_215804282.1 S66 peptidase family protein -
  KX728_RS08595 (KX728_08590) - 1771852..1772115 (+) 264 WP_000166113.1 SemiSWEET family transporter -
  KX728_RS08600 (KX728_08595) - 1772198..1772761 (-) 564 WP_215804281.1 DNA-3-methyladenine glycosylase I -
  KX728_RS08605 (KX728_08600) ruvA 1772771..1773364 (-) 594 WP_000273410.1 Holliday junction branch migration protein RuvA Machinery gene
  KX728_RS08610 (KX728_08605) - 1773524..1774021 (+) 498 WP_084856514.1 helix-turn-helix domain-containing protein -
  KX728_RS08615 (KX728_08610) mutL 1774162..1776111 (-) 1950 Protein_1664 DNA mismatch repair endonuclease MutL -
  KX728_RS08620 (KX728_08615) - 1776320..1776760 (+) 441 WP_215804280.1 LytTR family DNA-binding domain-containing protein -
  KX728_RS08625 (KX728_08620) - 1776757..1777215 (+) 459 WP_215804279.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21724.19 Da        Isoelectric Point: 6.2573

>NTDB_id=514665 KX728_RS08605 WP_000273410.1 1772771..1773364(-) (ruvA) [Streptococcus oralis strain 34]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=514665 KX728_RS08605 WP_000273410.1 1772771..1773364(-) (ruvA) [Streptococcus oralis strain 34]
ATGTACGAATATTTAAAAGGAATCATTACTAAAATCACTGCCAAATACATCGTCCTAGAGGCAAATGGTATAGGTTATAT
TTTGCATGTAGCCAATCCCTATGCTTACTCAGGTCAGGTCAATCAAGAAACTCAAATTTATGTGCACCAAGTTGTCCGTG
AGGACGCCCATCTGCTCTATGGTTTTCGATCAGAAGATGAGAAGAAACTCTTTCTTAGTCTGATTTCGGTATCAGGGATT
GGTCCGGTATCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAGGCGATTGAAACTAAGAACATCAC
CTACTTGACTAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTAGACTTGGAAGGTAAGGTAGTTGTGG
CTAGCGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCCATGGAAGCCATG
TTGGCACTGGGCTACAAGGCGACTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAATCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426